Division of Gynecologic Oncology

The Gynecologic Oncology Division at the University of Iowa consists of four attending physicians, three fellows-in-training, two physician assistants, three nurses and supporting research and clerical staff. The concentration of our division remains the care of women with gynecologic malignancies. Our service area includes all counties of Iowa as well as western Illinois. Our patients are seen and treated in the National Cancer Institute designated Holden Comprehensive Cancer Center on the University of Iowa Hospitals campus

Chaotic systems in complex phase space

This paper examines numerically the complex classical trajectories of the kicked rotor and the double pendulum. Both of these systems exhibit a transition to chaos, and this feature is studied in complex phase space. Additionally, it is shown that the short-time and long-time behaviors of these two PT-symmetric dynamical models in complex phase space exhibit strong qualitative similarities.Comment: 22 page, 16 figure

Ligand-based virtual screening using binary kernel discrimination

This paper discusses the use of a machine-learning technique called binary kernel discrimination (BKD) for virtual screening in drug- and pesticide-discovery programmes. BKD is compared with several other ligand-based tools for virtual screening in databases of 2D structures represented by fragment bit-strings, and is shown to provide an effective, and reasonably efficient, way of prioritising compounds for biological screening

Atmospheric potential oxygen: New observations and their implications for some atmospheric and oceanic models

Measurements of atmospheric O2/N2 ratios and CO2 concentrations can be combined into a tracer known as atmospheric potential oxygen (APO ≈ O2/N2 + CO2) that is conservative with respect to terrestrial biological activity. Consequently, APO reflects primarily ocean biogeochemistry and atmospheric circulation. Building on the work of Stephens et al. (1998), we present a set of APO observations for the years 1996-2003 with unprecedented spatial coverage. Combining data from the Princeton and Scripps air sampling programs, the data set includes new observations collected from ships in the low-latitude Pacific. The data show a smaller interhemispheric APO gradient than was observed in past studies, and different structure within the hemispheres. These differences appear to be due primarily to real changes in the APO field over time. The data also show a significant maximum in APO near the equator. Following the approach of Gruber et al. (2001), we compare these observations with predictions of APO generated from ocean O2 and CO2 flux fields and forward models of atmospheric transport. Our model predictions differ from those of earlier modeling studies, reflecting primarily the choice of atmospheric transport model (TM3 in this study). The model predictions show generally good agreement with the observations, matching the size of the interhemispheric gradient, the approximate amplitude and extent of the equatorial maximum, and the amplitude and phasing of the seasonal APO cycle at most stations. Room for improvement remains. The agreement in the interhemispheric gradient appears to be coincidental; over the last decade, the true APO gradient has evolved to a value that is consistent with our time-independent model. In addition, the equatorial maximum is somewhat more pronounced in the data than the model. This may be due to overly vigorous model transport, or insufficient spatial resolution in the air-sea fluxes used in our modeling effort. Finally, the seasonal cycles predicted by the model of atmospheric transport show evidence of an excessive seasonal rectifier in the Aleutian Islands and smaller problems elsewhere. Copyright 2006 by the American Geophysical Union

Ultrasonic Detection of a Plastic Hinge in Bolted Timber Connections

Connections between structural members are critical elements that typically govern the performance of structural systems; hence, techniques for monitoring the condition of connections are needed to provide early warning of structural damage. Plastic hinge formation in fasteners frequently occurs in timber connections when the yield capacity is exceeded. An innovative pulse echo testing technique was developed for detecting the formation of a plastic hinge in bolted timber connections and estimating the associated magnitude of connection displacement. A shift in overall signal centroid proved to be the best flTedictor of plastic hinge formation, with a coefficient of determination (R2) of 0.9. As the plastic hinge angle increased, the signal centroid shifted to the right since a higher proportion of pulse energy was forced to undergo multiple transverse wave reflections caused by the deformed geometry of the bolt. Because the determination of a shift in signal centroid requires the availability of prior test information for the initially undeformed fastener, an alternate linear relationship between echo amplitude ratios and plastic hinge formation was also proposed with an adjusted R2 of 0.87. This three parameter regression equation had the advantages of requiring no prior testing information and eliminating ambiguity in signal analysis associated with selection of echo start and end points. Plastic hinge formation was correlated with connection ductility, magnitude of connection overload and energy based measures of connection damage to assess residual connection capacity

Ultrasonic Plate Wave Evaluation of Natural Fiber Composite Panels

Two key shortcomings of current ultrasonic nondestructive evaluation (NDE) techniques for plywood, medium density fiberboard (MDF), and oriented strandboard are the reliance on empirical correlations and the neglect of valuable waveform information. The research reported herein examined the feasibility of using fundamental mechanics, wave propagation, and laminated, shear deformable plate theories to nondestructively evaluate material properties in natural fiber-based composite panels. Dispersion curves were constructed exhibiting the variation of flexural plate wave phase velocity with frequency. Based on shear deformable laminated plate wave theory, flexural and transverse shear rigidity values for solid transversely isotropic, laminated transversely isotropic, and solid orthotropic natural fiber-based composite panels were obtained from the dispersion curves. Axial rigidity values were obtained directly from extensional plate wave phase velocity. Excellent agreement (within 3%) of flexural rigidity values was obtained between NDE and mechanical testing for most panels. Transverse shear modulus values obtained from plate wave tests were within 4% of values obtained from through-thickness ultrasonic shear wave speed. Tensile and compressive axial rigidity values obtained from NDE were 22% to 41% higher than mechanical tension and compression test results. These differences between NDE and axial mechanical testing results are likely due to load-rate effects; however, these large differences were not apparent in the flexural and transverse shear comparisons. This fundamental research advances the state-of-the-art of NDE of wood-based composites by replacing empirical approaches with a technique based on fundamental mechanics, shear deformation laminated plate theory, and plate wave propagation theory

Calculation of the metric in the Hilbert space of a PT-symmetric model via the spectral theorem

In a previous paper (arXiv:math-ph/0604055) we introduced a very simple PT-symmetric non-Hermitian Hamiltonian with real spectrum and derived a closed formula for the metric operator relating the problem to a Hermitian one. In this note we propose an alternative formula for the metric operator, which we believe is more elegant and whose construction -- based on a backward use of the spectral theorem for self-adjoint operators -- provides new insights into the nature of the model.Comment: LaTeX, 6 page

Overview of the spectrometer optical fiber feed for the Habitable-zone Planet Finder

The Habitable-zone Planet Finder (HPF) is a highly stabilized fiber fed precision radial velocity (RV) spectrograph working in the Near Infrared (NIR): 810 - 1280 nm . In this paper we present an overview of the preparation of the optical fibers for HPF. The entire fiber train from the telescope focus down to the cryostat is detailed. We also discuss the fiber polishing, splicing and its integration into the instrument using a fused silica puck. HPF was designed to be able to operate in two modes, High Resolution (HR- the only mode mode currently commissioned) and High Efficiency (HE). We discuss these fiber heads and the procedure we adopted to attach the slit on to the HR fibers.Comment: Presented at 2018 SPIE Astronomical Telescopes + Instrumentation, Austin, Texas, USA. 18 pages, 25 figures, and 2 table

The relationship between vascularity, p53 gene mutations and distant metastatic disease in epithelial ovarian carcinoma

Mutations of the p53 tumor suppressor gene are associated with large differences (>7 vessels/HPF) in Microvessel density (MVD) counts between primary and metastatic tumor sites in patients with epithelial ovarian cancer. These data are consistent with models demonstrating p53 mutation functions directly to influence angiogenesis. This information supports continued therapy and research involving angiogenesis inhibitors in patients with ovarian cancer, especially in the setting of increased differences in MVD between primary and metastatic sites