A supercritical series analysis for the generalized contact process with diffusion

We study a model that generalizes the CP with diffusion. An additional transition is included in the model so that at a particular point of its phase diagram a crossover from the directed percolation to the compact directed percolation class will happen. We are particularly interested in the effect of diffusion on the properties of the crossover between the universality classes. To address this point, we develop a supercritical series expansion for the ultimate survival probability and analyse this series using d-log Pad\'e and partial differential approximants. We also obtain approximate solutions in the one- and two-site dynamical mean-field approximations. We find evidences that, at variance to what happens in mean-field approximations, the crossover exponent remains close to $\phi=2$ even for quite high diffusion rates, and therefore the critical line in the neighborhood of the multicritical point apparently does not reproduce the mean-field result (which leads to $\phi=0$) as the diffusion rate grows without bound

The nature of dark matter and the density profile and central behavior of relaxed halos

We show that the two basic assumptions of the model recently proposed by Manrique and coworkers for the universal density profile of cold dark matter (CDM) halos, namely that these objects grow inside out in periods of smooth accretion and that their mass profile and its radial derivatives are all continuous functions, are both well understood in terms of the very nature of CDM. Those two assumptions allow one to derive the typical density profile of halos of a given mass from the accretion rate characteristic of the particular cosmology. This profile was shown by Manrique and coworkers to recover the results of numerical simulations. In the present paper, we investigate its behavior beyond the ranges covered by present-day N-body simulations. We find that the central asymptotic logarithmic slope depends crucially on the shape of the power spectrum of density perturbations: it is equal to a constant negative value for power-law spectra and has central cores for the standard CDM power spectrum. The predicted density profile in the CDM case is well fitted by the 3D S\'ersic profile over at least 10 decades in halo mass. The values of the S\'ersic parameters depend on the mass of the structure considered. A practical procedure is provided that allows one to infer the typical values of the best NFW or S\'ersic fitting law parameters for halos of any mass and redshift in any given standard CDM cosmology.Comment: 9 pages, 6 figures, to appear in the ApJ vol. 647, september 20, 2007. Minor changes to match the published versio

A framework for certification of large-scale component-based parallel computing systems in a cloud computing platform for HPC services

This paper addresses the verification of software components in the context of their orchestration to build cloud-based scientific applications with high performance computing requirements. In such a scenario, components are often supplied by different sources and their cooperation rely on assumptions of conformity with their published behavioral interfaces. Therefore, a faulty or ill-designed component, failing to obey to the envisaged behavioral requirements, may have dramatic consequences in practice. Certifier components, introduced in this paper, implement a verification as a service framework and are able to access the implementation of other components and verify their consistency with respect to a number of functional, safety and liveness requirements relevant to a specific application or a class of them. It is shown how certifier components can be smoothly integrated in HPC Shelf, a cloud-based platform for high performance computing in which different sorts of users can design, deploy and execute scientific applications.SmartEGOV: Harnessing EGOV for Smart Governance (Foundations, methods, Tools) / NORTE-01-0145-FEDER000037, supported by Norte Portugal Regional Operational Programme (NORTE 2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (EFD

On the Formation of Copper Linear Atomic Suspended Chains

We report high resolution transmission electron microscopy and classical molecular dynamics simulation results of mechanically stretching copper nanowires conducting to linear atomic suspended chains (LACs) formation. In contrast with some previous experimental and theoretical work in literature that stated that the formation of LACs for copper should not exist our results showed the existence of LAC for the [111], [110], and [100] crystallographic directions, being thus the sequence of most probable occurence.Comment: 4 pages, 3 figure

Dissipationless Collapse of Spherical Protogalaxies and the Fundamental Plane

Following on from the numerical work of Capelato, de Carvalho & Carlberg (1995, 1997), where dissipationless merger simulations were shown to reproduce the "Fundamental Plane" (FP) of elliptical galaxies, we investigate whether the end products of pure, spherically symmetric, one-component dissipationless {\it collapses} could also reproduce the FP. Past numerical work on collisionless collapses have addressed important issues on the dynamical/structural characteristics of collapsed equilibrium systems. However, the study of collisionless collapse in the context of the nature of the FP has not been satisfactorily addressed yet. Our aim in this paper is to focus our attention on the resulting collapse of simple one-component spherical models with a range of different initial virial coefficients. We find that the characteristic correlations of the models are compatible with virialized, centrally homologous systems. Our results strengthen the idea that merging may be a fundamental ingredient in forming non-homologous objects.Comment: 9 pages, 4 Postscript figures, Astronomy & Astrophysics in press (2002). Abstract placement correcte

Draft genome sequence of the blaOXA-436- and blaNDM-1-harboring Shewanella putrefaciens SA70 isolate

ABSTRACT We sequenced a carbapenem-resistant Shewanella putrefaciens isolate cultured from the sink handle of a Pakistan hospital room. Assembly annotation indicates that the isolate has a chromosomal bla OXA-436 carbapenemase and a plasmid-borne bla NDM-1 gene. To our knowledge, this is the first report of a Shewanella species harboring bla NDM . </jats:p

DCJ-indel and DCJ-substitution distances with distinct operation costs

BACKGROUND: Classical approaches to compute the genomic distance are usually limited to genomes with the same content and take into consideration only rearrangements that change the organization of the genome (i.e. positions and orientation of pieces of DNA, number and type of chromosomes, etc.), such as inversions, translocations, fusions and fissions. These operations are generically represented by the double-cut and join (DCJ) operation. The distance between two genomes, in terms of number of DCJ operations, can be computed in linear time. In order to handle genomes with distinct contents, also insertions and deletions of fragments of DNA – named indels – must be allowed. More powerful than an indel is a substitution of a fragment of DNA by another fragment of DNA. Indels and substitutions are called content-modifying operations. It has been shown that both the DCJ-indel and the DCJ-substitution distances can also be computed in linear time, assuming that the same cost is assigned to any DCJ or content-modifying operation. RESULTS: In the present study we extend the DCJ-indel and the DCJ-substitution models, considering that the content-modifying cost is distinct from and upper bounded by the DCJ cost, and show that the distance in both models can still be computed in linear time. Although the triangular inequality can be disrupted in both models, we also show how to efficiently fix this problem a posteriori