Overexpression of BMI-1 Promotes Cell Growth and Resistance to Cisplatin Treatment in Osteosarcoma

Background: BMI-1 is a member of the polycomb group of genes (PcGs), and it has been implicated in the development and progression of several malignancies, but its role in osteosarcoma remains to be elucidated. Methodology/Principal Findings: In the present study, we found that BMI-1 was overexpressed in different types of osteosarcomas. Downregulation of BMI-1 by lentivirus mediated RNA interference (RNAi) significantly impaired cell viability and colony formation in vitro and tumorigenesis in vivo of osteosarcoma cells. BMI-1 knockdown sensitized cells to cisplatininduced apoptosis through inhibition of PI3K/AKT pathway. Moreover, BMI-1-depletion-induced phenotype could be rescued by forced expression of BMI-1 wobble mutant which is resistant to inhibition by the small interfering RNA (siRNA). Conclusions/Significance: These findings suggest a crucial role for BMI-1 in osteosarcoma pathogenesis

Allopatric divergence and hybridization within Cupressus chengiana (Cupressaceae), a threatened conifer in the northern Hengduan Mountains of western China

Having a comprehensive understanding of population structure, genetic differentiation and demographic history is important for the conservation and management of threatened species. High‐throughput sequencing (HTS) provides exciting opportunities to address a wide range of factors for conservation genetics. Here, we generated HTS data and identified 266,884 high‐quality single nucleotide polymorphisms from 82 individuals of Cupressus chengiana , to assess population genomics across the species' full range, comprising the Daduhe River (DDH), Minjiang River (MJR) and Bailongjiang River (BLJ) catchments in western China. admixture , principal components analysis and phylogenetic analyses indicated that each region contains a distinct lineage, with high levels of differentiation between them (DDH, MJR and BLJ lineages). MJR was newly distinguished compared to previous surveys, and evidence including coalescent simulations supported a hybrid origin of MJR during the Quaternary. Each of these three lineages should be recognized as an evolutionarily significant unit (ESU), due to isolation, differing genetic adaptations and different demographic history. Currently, each ESU faces distinct threats, and will require different conservation strategies. Our work shows that population genomic approaches using HTS can reconstruct the complex evolutionary history of threatened species in mountainous regions, and hence inform conservation efforts, and contribute to the understanding of high biodiversity in mountains.Funding provided by: National Natural Science Foundation of ChinaCrossref Funder Registry ID: http://dx.doi.org/10.13039/501100001809Award Number: 31622015Funding provided by: National Natural Science Foundation of ChinaCrossref Funder Registry ID: http://dx.doi.org/10.13039/501100001809Award Number: 31590821Funding provided by: National Natural Science Foundation of ChinaCrossref Funder Registry ID: http://dx.doi.org/10.13039/501100001809Award Number: 31370261Funding provided by: National Basic Research Program of China*Crossref Funder Registry ID: Award Number: 2014CB954100Funding provided by: Sichuan University Fundamental Research Funds for the Central Universities*Crossref Funder Registry ID: Award Number: SCU2019D013Funding provided by: Sichuan University Fundamental Research Funds for the Central Universities*Crossref Funder Registry ID: Award Number: SCU2018D006Funding provided by: National Basic Research Program of ChinaCrossref Funder Registry ID: http://dx.doi.org/10.13039/501100012166Award Number: 2014CB954100Funding provided by: Sichuan University Fundamental Research Funds for the Central UniversitiesCrossref Funder Registry ID: Award Number: SCU2019D013We identified 266,884 high-quality SNPs from 82 individuals to assess population genomics of Cupressus chengiana across its full range. To get a high-quality reference, single-molecule real-time (SMRT) sequencing was used to obtain the full-length transcriptome of C. chengiana. A total of 82 samples were collected for RNA-seq. We used bwa-mem to align the quality-filtered reads of each individual to the refences sequences. We used the "mpileup" command in SAMTOOLS to identify SNPs. Data were filtered with the following processes: SNPs with a mapping quality <30, a mapping depth <10, genotyping rate <50% per group, minor allele frequency (MAF) <5%, or in 5bps windows around any indel

Evolutionary origin of a tetraploid allium species in the Qinghai-Tibet Plateau

Extinct taxa may be detectable if they were ancestors to extant hybrid species, which retain their genetic signature. In this study, we combined phylogenomics, population genetics and fluorescence in situ hybridization (GISH and FISH) analyses to trace the origin of the alpine tetraploid Allium tetraploideum (2n = 4x = 32), one of the five known members in the subgenus Cyathophora. We found that A. tetraploideum was an obvious allotetrapoploid derived from ancestors including at least two closely related diploid species, A. farreri and A. cyathophorum, from which it differs by multiple ecological and genomic attributes. However, these two species cannot account for the full genome of A. tetraploideum, indicating that at least one extinct diploid is also involved in its ancestry. Furthermore, A. tetraploideum appears to have arisen via homoploid hybrid speciation (HHS) from two extinct allotetraploid parents, which derived in turn from the aforementioned diploids. Other modes of origin were possible, but all were even more complex and involved additional extinct ancestors. Our study together highlights how some polyploid species might have very complex origins, involving both HHS and polyploid speciation and also extinct ancestors.</p

Effects of excluding grazing on the vegetation and soils of degraded sparse-elm grassland in the Horqin Sandy Land, China

Livestock grazing is a crucial cause of vegetation degradation and desertification in sandy lands. The sparse-elm grassland of Horqin Sandy Land, China has suffered severe degradation of biodiversity and ecosystem services. Management to exclude grazing is often necessary for ecological restoration, especially in arid and semi-arid regions. We report effects on vegetation and soils in a 10-year experiment to exclude livestock, completely or seasonally, in comparison with a continuously grazed area in Horqin. Complete exclusion of grazing and restriction of grazing to summer both led to significantly increased plant cover and density relative to the grazed control. Species richness increased, reflected in higher Shannon-Wiener indices; only complete exclusion increased the Simpson diversity index, whereas Pielou evenness was significantly lowest under seasonal grazing. Exclosure treatments were also associated with improved soil texture, and increased water retention, available nitrogen, total nitrogen, total carbon and total phosphorus. Soil pH and C/N ratio were highest under the seasonal grazing regime. The results indicated that exclosure management indeed improved biodiversity and ecosystem services in an erosion-prone region. Although total exclosure was most effective in restoration of degraded sparse-elm grassland, seasonal grazing management was highly beneficial and represented a good compromise with resource utilization and economic development

Performance and microbial community analysis on nitrate removal in a bioelectrochemical reactor.

In this experiment, we took reflux sludge, sludge from an aeration tank, and soil from roots as microbial inoculating sources for an electrochemical device for denitrification with high-throughput sequencing on cathodic biofilms. The efficiency of nitrate nitrogen removal using different microbial inoculates varied among voltages. The optimal voltages for denitrification of reflux sludge, aeration tank sludge, and root soil were 0.7V, 0.5V, and 0.5V, respectively. Further analysis revealed that the respective voltages had a significant effect upon microbial growth from the respective inoculates. Proteobacteria and Firmicutes were the main denitrifying microbes. With the addition of low current (produced by the applied voltage), the Chao1, Shannon and Simpson indexes of the diversity of microorganisms in soil inoculation sources increased, indicating that low current can increase the diversity and richness of the microorganisms, while the reflux sludge and aeration tank sludge showed different changes. Low-current stimulation decreased microbial diversity to a certain extent. Pseudomonas showed a trend of decline with increasing applied voltage, in which the MEC (microbial electrolysis cell) of rhizosphere soil as inoculates decreased most significantly from 77.05% to 12.58%, while the MEC of Fusibacter showed a significant increase, and the sludge of reflux sludge, aeration tank and rhizosphere soil increased by 31.12%, 18.7% and 34.6%, respectively. The applied voltage also significantly increased the abundance of Azoarcus in communities from the respective inoculates

SPR imaging combined with cyclic voltammetry for the detection of neural activity

Surface plasmon resonance (SPR) detects changes in refractive index at a metal-dielectric interface. In this study, SPR imaging (SPRi) combined with cyclic voltammetry (CV) was applied to detect neural activity in isolated bullfrog sciatic nerves. The neural activities induced by chemical and electrical stimulation led to an SPR response, and the activities were recorded in real time. The activities of different parts of the sciatic nerve were recorded and compared. The results demonstrated that SPR imaging combined with CV is a powerful tool for the investigation of neural activity

Modelling of Web-Crippling Behavior of Pultruded GFRP I Sections at Elevated Temperatures

The concentrated transverse load may lead to the web crippling of pultruded GFRP sections due to the lower transverse mechanical properties. Several investigations have been conducted on the web-crippling behavior of the GFRP sections under room temperature. However, the web-crippling behavior is not yet understood when subjected to elevated temperatures. To address this issue, a finite element model considering the temperature-dependent material properties, Hashin failure criterion and the damage evolution law are successfully developed to simulate the web-crippling behavior of the GFRP I sections under elevated temperatures. The numerical model was validated by the web-crippling experiments at room temperature with the end-two-flange (ETF) and end bearing with ground support (EG) loading configurations. The developed model can accurately predict the ultimate loads and failure modes. Moreover, it was found that the initial damage was triggered by exceeding the shear strength at the web-flange junction near the corner of the bearing plate and independent of the elevated temperatures and loading configurations. The ultimate load and stiffness decreased obviously with the increasing temperature. At 220 °C, the ultimate load of specimens under ETF and EG loading configurations significantly decreased by 57% and 62%, respectively, whereas the elastic stiffness obviously reduced by 87% and 88%, respectively