Simulations of extensional flow in microrheometric devices

We present a detailed numerical study of the flow of a Newtonian fluid through microrheometric devices featuring a sudden contraction–expansion. This flow configuration is typically used to generate extensional deformations and high strain rates. The excess pressure drop resulting from the converging and diverging flow is an important dynamic measure to quantify if the device is intended to be used as a microfluidic extensional rheometer. To explore this idea, we examine the effect of the contraction length, aspect ratio and Reynolds number on the flow kinematics and resulting pressure field. Analysis of the computed velocity and pressure fields show that, for typical experimental conditions used in microfluidic devices, the steady flow is highly three-dimensional with open spiraling vortical structures in the stagnant corner regions. The numerical simulations of the local kinematics and global pressure drop are in good agreement with experimental results. The device aspect ratio is shown to have a strong impact on the flow and consequently on the excess pressure drop, which is quantified in terms of the dimensionless Couette and Bagley correction factors. We suggest an approach for calculating the Bagley correction which may be especially appropriate for planar microchannels

Impact of the spatial resolution of satellite remote sensing sensors in the quantification of total suspended sediment concentration: A case study in turbid waters of Northern Western Australia

The impact of anthropogenic activities on coastal waters is a cause of concern because such activities add to the total suspended sediment (TSS) budget of the coastal waters, which have negative impacts on the coastal ecosystem. Satellite remote sensing provides a powerful tool in monitoring TSS concentration at high spatiotemporal resolution, but coastal managers should be mindful that the satellite-derived TSS concentrations are dependent on the satellite sensor's radiometric properties, atmospheric correction approaches, the spatial resolution and the limitations of specific TSS algorithms. In this study, we investigated the impact of different spatial resolutions of satellite sensor on the quantification of TSS concentration in coastal waters of northern Western Australia. We quantified the TSS product derived from MODerate resolution Imaging Spectroradiometer (MODIS)-Aqua, Landsat-8 Operational Land Image (OLI), and WorldView-2 (WV2) at native spatial resolutions of 250 m, 30 m and 2 m respectively and coarser spatial resolution (resampled up to 5 km) to quantify the impact of spatial resolution on the derived TSS product in different turbidity conditions. The results from the study show that in the waters of high turbidity and high spatial variability, the high spatial resolution WV2 sensor reported TSS concentration as high as 160 mg L-1 while the low spatial resolution MODIS-Aqua reported a maximum TSS concentration of 23.6 mg L-1. Degrading the spatial resolution of each satellite sensor for highly spatially variable turbid waters led to variability in the TSS concentrations of 114.46%, 304.68% and 38.2% for WV2, Landsat-8 OLI and MODIS-Aqua respectively. The implications of this work are particularly relevant in the situation of compliance monitoring where operations may be required to restrict TSS concentrations to a pre-defined limit

Identification of alleles of carotenoid pathway genes important for zeaxanthin accumulation in potato tubers

We have investigated the genetics and molecular biology of orange flesh colour in potato (Solanum tuberosum L.). To this end the natural diversity in three genes of the carotenoid pathway was assessed by SNP analyses. Association analysis was performed between SNP haplotypes and flesh colour phenotypes in diploid and tetraploid potato genotypes. We observed that among eleven beta-carotene hydroxylase 2 (Chy2) alleles only one dominant allele has a major effect, changing white into yellow flesh colour. In contrast, none of the lycopene epsilon cyclase (Lcye) alleles seemed to have a large effect on flesh colour. Analysis of zeaxanthin epoxidase (Zep) alleles showed that all (diploid) genotypes with orange tuber flesh were homozygous for one specific Zep allele. This Zep allele showed a reduced level of expression. The complete genomic sequence of the recessive Zep allele, including the promoter, was determined, and compared with the sequence of other Zep alleles. The most striking difference was the presence of a non-LTR retrotransposon sequence in intron 1 of the recessive Zep allele, which was absent in all other Zep alleles investigated. We hypothesise that the presence of this large sequence in intron 1 caused the lower expression level, resulting in reduced Zep activity and accumulation of zeaxanthin. Only genotypes combining presence of the dominant Chy2 allele with homozygosity for the recessive Zep allele produced orange-fleshed tubers that accumulated large amounts of zeaxanthin

GLORIA - A globally representative hyperspectral in situ dataset for optical sensing of water quality

The development of algorithms for remote sensing of water quality (RSWQ) requires a large amount of in situ data to account for the bio-geo-optical diversity of inland and coastal waters. The GLObal Reflectance community dataset for Imaging and optical sensing of Aquatic environments (GLORIA) includes 7,572 curated hyperspectral remote sensing reflectance measurements at 1 nm intervals within the 350 to 900 nm wavelength range. In addition, at least one co-located water quality measurement of chlorophyll a, total suspended solids, absorption by dissolved substances, and Secchi depth, is provided. The data were contributed by researchers affiliated with 59 institutions worldwide and come from 450 different water bodies, making GLORIA the de-facto state of knowledge of in situ coastal and inland aquatic optical diversity. Each measurement is documented with comprehensive methodological details, allowing users to evaluate fitness-for-purpose, and providing a reference for practitioners planning similar measurements. We provide open and free access to this dataset with the goal of enabling scientific and technological advancement towards operational regional and global RSWQ monitoring

Technical note: correcting for shear strain in an oscillatory squeeze flow rheometer

Currently, rheologists working in the field of oscillatory squeeze flow use extensional strain to characterize the deformations. Due to the shear-dominated flow observed in low Trouton ratio fluids undergoing squeeze flow, it is proposed that an alternate geometry-dependent definition for shear strain in squeeze flow be used instead. Through the use of finite element modelling, it has been shown that this geometry-dependent strain definition allows for better comparison of measurements between both squeeze flow rheometers of different geometric configurations and rotational rheometers. This idea was then explored through laboratory experiments, further supporting this hypothesis. While this definition of strain will only hold true within the bounds of a material’s linear viscoelastic regime, it will help to determine where this boundary is, and thus allow for more accurate material characterization. This type of relationship will become increasingly important with the growing use of squeeze flow rheometers for large-amplitude oscillatory squeezing trials

Recirculating Flows Involving Short Fiber Suspensions: Numerical Difficulties and Efficient Advanced Micro-Macro Solvers

Numerical modelling of non-Newtonian flows usually involves the coupling between equations of motion characterized by an elliptic character, and the fluid constitutive equation, which defines an advection problem linked to the fluid history. There are different numerical techniques to treat the hyperbolic advection equations. In non-recirculating flows, Eulerian discretizations can give a convergent solution within a short computing time. However, the existence of steady recirculating flow areas induces additional difficulties. Actually, in these flows neither boundary conditions nor initial conditions are known. In this paper we compares different advanced strategies (some of them recently proposed and extended here for addressing complex flows) when they are applied to the solution of the kinetic theory description of a short fiber suspension fluid flows

Advances in remote sensing of great lakes algal blooms

Many regions of the Great Lakes now see recurring cyanobacterial harmful algal blooms (cyanoHABs), with documented repercussions for ecosystem services, public health, and ecosystem integrity. Early detection and comprehensive monitoring of cyanoHABs are fundamental to their effective management and mitigation of detrimental impacts. Satellite remote sensing has provided the means by which algal blooms in the Great Lakes can be observed with unprecedented frequency and spatial coverage. Algorithms have been developed and validated; fully automated data processing streams have been rendered operational; and stakeholders have been engaged in order to develop user-friendly end products. Such products have been integral in providing near-real-time monitoring of bloom conditions, documenting spatiotemporal trends, improving understanding of environmental drivers of blooms, and guiding nutrient management actions. In this chapter we present background information on remote sensing of algal blooms, document the current state of knowledge with a focus on Lake Erie, and discuss remote sensing products available to the Great Lakes community