Bioinformatics of the sugarcane EST project

The Sugarcane EST project (SUCEST) produced 291,904 expressed sequence tags (ESTs) in a consortium that involved 74 sequencing and data mining laboratories. We created a web site for this project that served as a ?meeting point? for receiving, processing, analyzing, and providing services to help explore the sequence data. In this paper we describe the information pathway that we implemented to support this project and a brief explanation of the clustering procedure, which resulted in 43,141 clusters.O projeto SUCEST (Sugarcane EST Project) produziu 291.904 ESTs de cana-de-açúcar. Nesse projeto, o Laboratório de Bioinformática criou o web site que foi o ponto de encontro dos 74 laboratórios de sequenciamento e data mining que fizeram parte do consórcio para o projeto. O Laboratório de Bioinformática (LBI) recebeu, processou, analisou e disponibilizou ferramentas para a exploração dos dados. Neste artigo os dados, serviços e programas implementados pelo LBI para o projeto são descritos, incluindo o procedimento de clustering que gerou 43.141 clusters.915Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq

Kondo effect in transport through Aharonov-Bohm and Aharonov-Casher interferometers

We derive the extension of the Hubbard model to include Rashba spin-orbit coupling that correctly describes Aharonov-Bohm and Aharonov-Casher phases in a ring under applied magnetic and electric fields. When the ring is connected to conducting leads, we develop a formalism that is able to describe both, Kondo and interference effects. We find that in the Kondo regime, the spin-orbit coupling reduces strongly the conductance from the unitary limit. This effect in combination with the magnetic flux, can be used to produce spin polarized carriers.Comment: 6 pages, 4 figures, presented at SCES2008, Buzios, Brasi