Dynamics and distribution of bacterial and archaeal communities in oil-contaminated temperate coastal mudflat mesocosms

Mudflats are ecologically important habitats that are susceptible to oil pollution, but intervention is difficult in these fine-grained sediments, and so clean-up usually relies on natural attenuation. Therefore, we investigated the impact of crude oil on the bacterial, diatom and archaeal communities within the upper parts of the diatom-dominated sediment and the biofilm that detached from the surface at high tide. Biodegradation of petroleum hydrocarbons was rapid, with a 50 % decrease in concentration in the 0–2-mm section of sediment by 3 days, indicating the presence of a primed hydrocarbon-degrading community. The biggest oil-induced change was in the biofilm that detached from the sediment, with increased relative abundance of several types of diatom and of the obligately hydrocarbonoclastic Oleibacter sp., which constituted 5 % of the pyrosequences in the oiled floating biofilm on day 3 compared to 0.6 % in the non-oiled biofilm. Differences in bacterial community composition between oiled and non-oiled samples from the 0–2-mm section of sediment were only significant at days 12 to 28, and the 2–4-mm-sediment bacterial communities were not significantly affected by oil. However, specific members of the Chromatiales were detected (1 % of sequences in the 2–4-mm section) only in the oiled sediment, supporting other work that implicates them in anaerobic hydrocarbon degradation. Unlike the Bacteria, the archaeal communities were not significantly affected by oil. In fact, changes in community composition over time, perhaps caused by decreased nutrient concentration and changes in grazing pressure, overshadowed the effect of oil for both Bacteria and Archaea. Many obligate hydrocarbonoclastic and generalist oil-degrading bacteria were isolated, and there was little correspondence between the isolates and the main taxa detected by pyrosequencing of sediment-extracted DNA, except for Alcanivorax, Thalassolituus, Cycloclasticus and Roseobacter spp., which were detected by both methods

Effects of rising temperature on pelagic biogeochemistry in mesocosm systems: a comparative analysis of the AQUASHIFT Kiel experiments

A comparative analysis of data, obtained during four indoor-mesocosm experiments with natural spring plankton communities from the Baltic Sea, was conducted to investigate whether biogeochemical cycling is affected by an increase in water temperature of up to 6 °C above present-day conditions. In all experiments, warming stimulated in particular heterotrophic bacterial processes and had an accelerating effect on the temporal development of phytoplankton blooms. This was also mirrored in the build-up and partitioning of organic matter between particulate and dissolved phases. Thus, warming increased both the magnitude and rate of dissolved organic carbon (DOC) build-up, whereas the accumulation of particulate organic carbon (POC) and phosphorus (POP) decreased with rising temperature. In concert, the observed temperature-mediated changes in biogeochemical components suggest strong shifts in the functioning of marine pelagic food webs and the ocean’s biological carbon pump, hence providing potential feedback mechanisms to Earth’s climate system

Weak diurnal changes in the biochemical properties and benthic macrofauna of urbanised mangrove forests and mudflats

Diurnal changes in the biochemical properties and the benthic macrofaunal assemblage of sediments in urbanised mangrove forests and their adjacent mudflats in Sydney Harbour were investigated. Behavioural and physiological changes in the microphytobenthos between day and night were predicted to cause diurnal changes in the micro-scale depth distribution of chlorophylls a and b and colloidal carbohydrate. In addition, because macrofauna can alter sediment properties, diurnal changes in the macrofaunal assemblages were investigated. The microphytobenthos at the study sites were predominantly filamentous green algae, although diatoms were present. Samples for biochemical analysis were collected from the top 2 mm of sediment using mini-cryolanders, during low tide in the day and at night. Three biochemical properties of the sediments were measured spectrophotometrically: chlorophylls a and b (surrogate for microphytobenthos biomass) and colloidal carbohydrate. The amount of chlorophylls tended to be less at night than during the day, but site to site variability was large and these differences were generally small and not significant. Depth profiles indicated that there was some redistribution of pigments in the surface 2 mm between day and night, possibly due to migration of microphytobenthos or physiological changes. There was no significant difference in chlorophylls between the mangrove forest and adjacent mudflat, with the exception of chlorophyll b at one sampling time, which was larger in the mangrove forest than on the mudflat. Colloidal carbohydrate was significantly larger in the mangrove forest and significantly less on the mudflat during the day at one site at one time, but otherwise showed no significant differences between day and night or between the mangrove forest and mudflat. Whilst there were some differences in the benthic macrofaunal assemblages between day and night, these differences were only significant for spionids and polychaetes at one time. There were, however, significant differences in assemblages of benthic macrofauna between the mangrove forest and mudflat, probably due to structural differences between these habitats such as the presence of pneumatophores, shade and leaf litter. In summary, there was some minor diurnal variation in the measured biochemical properties of the sediment, but not in the macrofaunal assemblage. Diurnal changes should, therefore, be considered when investigating biochemical properties in these habitats, but they are not a major influence. These findings contrast to previous studies on diatom dominated mudflats in Europe, where stronger diurnal changes in biochemical properties were found. Diurnal changes in the macrofauna assemblages were largely insignificant and therefore could not explain the changes in the biochemical properties. Diurnal effects on the macrofauna in these habitats are more likely to be via altered behaviours and this requires further investigation