Distinct and overlapping roles for AP-1 and GGAs revealed by the "knocksideways" system

Although adaptor protein complex 1 (AP-1) and Golgi-localized, γ ear-containing, ADP-ribosylation factor-binding proteins (GGAs) are both adaptors for clathrin-mediated intracellular trafficking, the pathways they mediate and their relationship to each other remain open questions [1]. To tease apart the functions of AP-1 and GGAs, we rapidly inactivated each adaptor using the “knocksideways” system [2] and then compared the protein composition of clathrin-coated vesicle (CCV) fractions from control and knocksideways cells. The AP-1 knocksideways resulted in a dramatic and unexpected loss of GGA2 from CCVs. Over 30 other peripheral membrane proteins and over 30 transmembrane proteins were also depleted, including several mutated in genetic disorders, indicating that AP-1 acts as a linchpin for intracellular CCV formation. In contrast, the GGA2 knocksideways affected only lysosomal hydrolases and their receptors. We propose that there are at least two populations of intracellular CCVs: one containing both GGAs and AP-1 for anterograde trafficking and another containing AP-1 for retrograde trafficking. Our study shows that knocksideways and proteomics are a powerful combination for investigating protein function, which can potentially be used on many different types of proteins

Microbial activity monitoring by the Integrated Arctic Earth Observing System (MamSIOS)

Microorganisms, though already integral elements, are likely to play an increasingly important role in the Earth’s climate system (Falkowski et al., 2008) and are known to affect polar biogeochemical cycles (Larose et al., 2013a). In particular, they play important roles in the generation and decomposition of climate active gases. However, current climate models do not take into account the response of microbial activity and their influence in biochemical cycles (Incorporating microbial processes into climate models, ASM report). To improve the predictive ability of climate models, it is important to understand the mechanisms by which microorganisms regulate terrestrial greenhouse gas flux and to determine whether changes in microbial processes will lead to net positive or negative feedbacks on greenhouse gas emissions (Singh et al., 2010). This contribution has been particularly overlooked for the polar regions (Figure 1), where the environment has traditionally been considered too harsh for significant microbial activity to occur. It has long been considered that any life, if present at all, was either dormant or functioning sub-optimally, as living organisms have to be well adapted or highly resistant to extreme cold and desiccation, low nutrient availability and seasonally variable UV radiation levels in order to survive (Harding et al., 2011; Cameron et al., 2012; Goordial et al., 2013; Larose et al., 2013a). However, it is now clear that microbial presence is ubiquitous across the polar regions, and recent research into the polar aerobiome points toward a potentially dynamic polar microbial community and with it, the possibility of significant microbial activity within the snowpack (Redeker et al., 2017), even in the most remote locations (Pearce et al., 2009). Research into the aerobiome has also demonstrated that microorganisms in aerial fallout may remain both viable and active (Sattler et al., 2001; Harding et al., 2011). Furthermore, the presence of microbes in remote, low nutrient, low water, very cold environments such as polar glacial surfaces is now well established for a number of key sites (Hodson et al., 2008; Larose et al., 2010)

The roles of the formal and informal sectors in the provision of effective science education

For many years, formal school science education has been criticised by students, teachers, parents and employers throughout the world. This article presents an argument that a greater collaboration between the formal and the informal sector could address some of these criticisms. The causes for concern about formal science education are summarised and the major approaches being taken to address them are outlined. The contributions that the informal sector currently makes to science education are identified. It is suggested that the provision of an effective science education entails an enhanced complementarity between the two sectors. Finally, there is a brief discussion of the collaboration and communication still needed if this is to be effective

Changes in meltwater chemistry over a 20-year period following a thermal regime switch from polythermal to cold-based glaciation at Austre Broggerbreen, Svalbard

Our long-term study gives a rare insight into meltwater hydrochemistry following the transition of Austre Brøggerbreen from polythermal to cold-based glaciation and its continued retreat. We find that the processes responsible for ion acquisition did not change throughout the period of records but became more productive. Two regimes before and after July/August 2000 were identified from changes in solute concentrations and pH. They resulted from increased chemical weathering occurring in ice-marginal and proglacial environments that have become progressively exposed by glacier retreat. Carbonate carbonation nearly doubled between 2000 and 2010, whilst increases in the weathering of silicate minerals were also marked. In addition, the end of ablation season chemistry was characterized by reactions in long residence time flow paths like those in subglacial environments, in spite of their absence in the watershed. Furthermore, the retreat of the glacier caused the sudden re-routing of meltwaters through its immediate forefield during 2009, which more than doubled crustal ion yields in this particular year and influenced chemical weathering in 2010 regardless of a low water flux. Such a “flush” of crustally derived ions can be meaningful for downstream terrestrial and marine ecosystems. We therefore find that, during glacier retreat, the recently exposed forefield is the most chemically active part of the watershed, making high rates of weathering possible, even when ice losses have caused a switch to cold-based conditions with no delayed subglacial drainage flowpaths. In addition, the drainage system reorganization events result in significant pCO2 depletion in an otherwise high pCO2 system

Theoretical framework and diagnostic criteria for the identification of palaeo-subglacial lakes.

The Antarctic Ice Sheet is underlain by numerous subglacial lakes, which comprise a significant and active component of its hydrological network. These lakes are widespread and occur at a range of scales under a variety of conditions. At present much glaciological research is concerned with the role of modern subglacial lake systems in Antarctica. Another approach to the exploration of subglacial lakes involves identification of the geological record of subglacial lakes that once existed beneath former ice sheets. This is challenging, both conceptually, in identifying whether and where subglacial lakes may have formed, and also distinguishing the signature of former subglacial lakes in the geological record. In this work we provide a synthesis of subglacial lake types that have been identified or may theoretically exist beneath contemporary or palaeo-ice sheets. This includes a discussion of the formative mechanisms that could trigger onset of (or drain) subglacial lakes. These concepts provide a framework for discussing the probability that subglacial lakes exist(ed) beneath other (palaeo-)ice sheets. Indeed we conclude that the former mid-latitude ice sheets are likely to have hosted subglacial lakes, although the spatial distribution, frequency and type of lakes may have differed from today's ice sheets and between palaeoice sheets. Given this possibility, we propose diagnostic criteria for identifying palaeo-subglacial lakes in the geological record. These criteria are derived from contemporary observations, hydrological theory and process-analogues and provide an observational template for detailed field investigation

Exploring former subglacial Hodgson Lake, Antarctica Paper I: site description, geomorphology and limnology

At retreating margins of the Antarctic Ice Sheet, there are a number of locations where former subglacial lakes are emerging from under the ice but remain perennially ice-covered. This paper presents a site description of one of these lakes, Hodgson Lake, situated on southern Alexander Island, west of the Antarctic Peninsula (72° 00.549′ S, 68° 27.708′ W). First, we describe the physical setting of the lake using topographic and geomorphological maps. Second, we determine local ice sheet deglaciation history and the emergence of the lake using cosmogenic isotope dating of glacial erratics cross-referenced to optically stimulated luminescence dating of raised lake shoreline deltas formed during ice recession. Third we describe the physical and chemical limnology including the biological and biogeochemical evidence for life. Results show that the ice mass over Hodgson Lake was at least 295 m thick at 13.5 ka and has progressively thinned through the Holocene with the lake ice cover reaching an altitude of c. 6.5 m above the present lake ice sometime after 4.6 ka. Thick perennial ice cover persists over the lake today and the waters have remained isolated from the atmosphere with a chemical composition consistent with subglacial melting of catchment ice. The lake is ultra-oligotrophic with nutrient concentrations within the ranges of those found in the accreted lake ice of subglacial Lake Vostok. Total organic carbon and dissolved organic carbon are present, but at lower concentrations than typically recorded in continental rain. No organisms and no pigments associated with photosynthetic or bacterial activity were detected in the water column using light microscopy and high performance liquid chromatography. Increases in SO4 and cation concentrations at depth and declines in O2 provide some evidence for sulphide oxidation and very minor bacterial demand upon O2 that result in small, perhaps undetectable changes in the carbon biogeochemistry. However, in general the chemical markers of life are inconclusive and abiotic processes such as the diffusion of pore waters into the lake from its benthic sediments are far more likely to be responsible for the increased concentrations of ions at depth. The next phases of this research will be to carry out a palaeolimnological study of the lake sediments to see what they can reveal about the history of the lake in its subglacial state, and a detailed molecular analysis of the lake water and benthos to determine what forms of life are present. Combined, these studies will test some of the methodologies that will be used to explore deep continental subglacial lakes