On the validity of statistical parametric mapping for nonuniformly and heterogeneously smooth one-dimensional biomechanical data

Nonuniform (non-constant) temporal smoothness can arise in biomechanical processes like impacts, and heterogeneous smoothness (unequal smoothness across observations) can arise in mechanically diverse comparisons such as padded vs. unpadded impacts, where padded dynamics are generally smoother than unpadded dynamics. It has been reported that statistical parametric mapping’s (SPM’s) probability values can be invalid for such cases. The purpose of this paper was to clarify the scope of validity for SPM analysis of nonuniformly and heterogeneously smooth one-dimensional (1D) data. We simulated a variety of nonuniformly and heterogeneously smooth Gaussian 1D data over a range of smoothness values, and computed Type I error rates across 10,000 simulation iterations for each smoothness type. Results showed that, in all cases, SPM accurately controlled error at the prescribed α=0.05. Moreover, the distribution of false positives was uniform across time, implying that all regions are equally likely to produce false positives, irrespective of local roughness. We nevertheless show that cluster-level inferences (i.e., p values specific to local regions of significance) may be over-or-underestimated by approximately 0.01 (for the currently simulated scenarios), but never exceed α by definition. We conclude that SPM’s null hypothesis rejection decisions are valid for both nonuniform and heterogeneous 1D data, but that clusters’ p values may be marginally too small/large in rough/smooth regions, respectively. Since cluster-level p values never exceed α, these p value errors are negligible for hypothesis testing purposes. Nevertheless, inter-cluster p value comparisons should be avoided. Implications for statistical power and general results interpretation are discussed

Comment on: ``Trace anomaly of dilaton coupled scalars in two dimensions''

The trace anomaly for nonminimally coupled scalars in spherically reduced gravity obtained by Bousso and Hawking (hep-th/9705236) is incorrect. We explain the reasons for the deviations from our correct (published) result which is supported by several other recent papers.Comment: 2 page

Thermodynamics of Black Holes in Two (and Higher) Dimensions

A comprehensive treatment of black hole thermodynamics in two-dimensional dilaton gravity is presented. We derive an improved action for these theories and construct the Euclidean path integral. An essentially unique boundary counterterm renders the improved action finite on-shell, and its variational properties guarantee that the path integral has a well-defined semi-classical limit. We give a detailed discussion of the canonical ensemble described by the Euclidean partition function, and examine various issues related to stability. Numerous examples are provided, including black hole backgrounds that appear in two dimensional solutions of string theory. We show that the Exact String Black Hole is one of the rare cases that admits a consistent thermodynamics without the need for an external thermal reservoir. Our approach can also be applied to certain higher-dimensional black holes, such as Schwarzschild-AdS, Reissner-Nordstrom, and BTZ.Comment: 63 pages, 3 pdf figures, v2: added reference

Long time black hole evaporation with bounded Hawking flux

The long time behavior of an evaporating Schwarzschild black hole is studied exploiting that it can be described by an effective theory in 2D, a particular dilaton gravity model. A crucial technical ingredient is Izawa's result on consistent deformations of 2D BF theory, while the most relevant physical assumption is boundedness of the asymptotic matter flux during the whole evaporation process. An attractor solution, the endpoint of the evaporation process, is found. Its metric is flat. However, the behavior of the dilaton field is nontrivial: it is argued that during the final flicker a first order phase transition occurs from a linear to a constant dilaton vacuum, thereby emitting a shock wave with a total energy of a fraction of the Planck mass. Another fraction of the Planck mass may reside in a cold remnant. [Note: More detailed abstract in the paper]Comment: 34 pages, 6 figures, v2: included new references and 2 new footnotes; v3: mayor revisions (extended intro, included pedagogical example, rearranged presentation, extended discussion on information paradox, updated references); v4: updated refs. (+ new ones), added comments, mostly on dilaton evaporation, rewrote abstract (short for arXiv, long for journal), moved pedagogic sec. to ap

The Human Fungal Pathogen Cryptococcus neoformans Escapes Macrophages by a Phagosome Emptying Mechanism That Is Inhibited by Arp2/3 Complex-Mediated Actin Polymerisation

The lysis of infected cells by disease-causing microorganisms is an efficient but risky strategy for disseminated infection, as it exposes the pathogen to the full repertoire of the host's immune system. Cryptococcus neoformans is a widespread fungal pathogen that causes a fatal meningitis in HIV and other immunocompromised patients. Following intracellular growth, cryptococci are able to escape their host cells by a non-lytic expulsive mechanism that may contribute to the invasion of the central nervous system. Non-lytic escape is also exhibited by some bacterial pathogens and is likely to facilitate long-term avoidance of the host immune system during latency. Here we show that phagosomes containing intracellular cryptococci undergo repeated cycles of actin polymerisation. These actin ‘flashes’ occur in both murine and human macrophages and are dependent on classical WASP-Arp2/3 complex mediated actin filament nucleation. Three dimensional confocal imaging time lapse revealed that such flashes are highly dynamic actin cages that form around the phagosome. Using fluorescent dextran as a phagosome membrane integrity probe, we find that the non-lytic expulsion of Cryptococcus occurs through fusion of the phagosome and plasma membranes and that, prior to expulsion, 95% of phagosomes become permeabilised, an event that is immediately followed by an actin flash. By using pharmacological agents to modulate both actin dynamics and upstream signalling events, we show that flash occurrence is inversely related to cryptococcal expulsion, suggesting that flashes may act to temporarily inhibit expulsion from infected phagocytes. In conclusion, our data reveal the existence of a novel actin-dependent process on phagosomes containing cryptococci that acts as a potential block to expulsion of Cryptococcus and may have significant implications for the dissemination of, and CNS invasion by, this organism.\ud \u

Geometric Interpretation and Classification of Global Solutions in Generalized Dilaton Gravity

Two dimensional gravity with torsion is proved to be equivalent to special types of generalized 2d dilaton gravity. E.g. in one version, the dilaton field is shown to be expressible by the extra scalar curvature, constructed for an independent Lorentz connection corresponding to a nontrivial torsion. Elimination of that dilaton field yields an equivalent torsionless theory, nonpolynomial in curvature. These theories, although locally equivalent exhibit quite different global properties of the general solution. We discuss the example of a (torsionless) dilaton theory equivalent to the $R^2 + T^2$--model. Each global solution of this model is shown to split into a set of global solutions of generalized dilaton gravity. In contrast to the theory with torsion the equivalent dilaton one exhibits solutions which are asymptotically flat in special ranges of the parameters. In the simplest case of ordinary dilaton gravity we clarify the well known problem of removing the Schwarzschild singularity by a field redefinition.Comment: 21 pages, 6 Postscript figure

PCA of waveforms and functional PCA: A primer for biomechanics.

Principal components analysis (PCA) of waveforms and functional PCA (fPCA) are statistical approaches used to explore patterns of variability in biomechanical curve data, with fPCA being an accepted statistical method grounded within the functional data analysis (FDA) statistical framework. This technical note demonstrates that PCA of waveforms is the most rudimentary form of FDA, and consequently can be rationalised within the FDA framework of statistical processes. Mathematical proofing applied demonstrations of both techniques, and an example of when fPCA may be of greater benefit to control over smoothing of functional principal components is provided using an open access motion sickness dataset. Finally, open access software is provided with this paper as means of priming the biomechanics community for using these methods as a part of future functional data explorations

Novel insights into host-fungal pathogen interactions derived from live-cell imaging

Acknowledgments The authors acknowledge funding from the Wellcome Trust (080088, 086827, 075470 and 099215) including a Wellcome Trust Strategic Award for Medical Mycology and Fungal Immunology 097377 and FP7-2007–2013 grant agreement HEALTH-F2-2010-260338–ALLFUN to NARG.Peer reviewedPublisher PD

An action for the exact string black hole

A local action is constructed describing the exact string black hole discovered by Dijkgraaf, Verlinde and Verlinde in 1992. It turns out to be a special 2D Maxwell-dilaton gravity theory, linear in curvature and field strength. Two constants of motion exist: mass M>1, determined by the level k, and U(1)-charge Q>0, determined by the value of the dilaton at the origin. ADM mass, Hawking temperature T_H \propto \sqrt{1-1/M} and Bekenstein-Hawking entropy are derived and studied in detail. Winding/momentum mode duality implies the existence of a similar action, arising from a branch ambiguity, which describes the exact string naked singularity. In the strong coupling limit the solution dual to AdS_2 is found to be the 5D Schwarzschild black hole. Some applications to black hole thermodynamics and 2D string theory are discussed and generalizations - supersymmetric extension, coupling to matter and critical collapse, quantization - are pointed out.Comment: 41 pages, 2 eps figures, dedicated to Wolfgang Kummer on occasion of his Emeritierung; v2: added ref; v3: extended discussion in sections 3.2, 3.3 and at the end of 5.3 by adding 2 pages of clarifying text; updated refs; corrected typo

Investigation of waste heat recovery system at supercritical conditions with vehicle drive cycles

Waste heat recovery (WHR) for internal combustion engines in vehicles using Organic Rankine cycle (ORC) has been a promising technology. The operation of the ORC WHR system in supercritical conditions has a potential to generate more power output and thermal efficiency compared with the conventional subcritical conditions. However, in supercritical conditions, the heat transfer process in the evaporator, the key component of the ORC WHR system, becomes unpredictable as the thermo-physical properties of the working fluid change with the temperature. Furthermore, the transient heat source from the vehicle’s exhaust makes the operation of the WHR system difficult. We investigated the performance of the ORC WHR system at supercritical conditions with engine’s exhaust data from real city and highway drive cycles. The effects of operating variables, such as refrigerant flow rates, evaporator and condenser pressure, and evaporator outlet temperature, on the performance indicators of the WHR system in supercritical conditions were examined. Simulation of operating parameters and the boundary of the WHR system are also included in this paper