Modelling the mutual interactions between hydrology, society and water supply systems

We developed a simple conceptual socio-hydrological model to explore the mutual interactions between water management systems and society. We examined the feedback among climate, population, wealth and water availability and capital investment. Given the focus on the interplay among these multiple variables, some simple schemes were designated in order to simulate rainfall inputs, surface and aquifer hydrology and to mimic economic and social mechanisms. The proposed model is applied to synthetic cases in order to explore the dynamics of the water demand, water availability and water deficit that in turn influence the capital invested in water infrastructures. The results show how societal wealth, the number of people living in a given area and the local climate can determine societal efforts in exploiting water resources, the frequency of water deficits and the amount of money invested overall in infrastructures

Comparative evaluation of image reconstruction methods for the siemens PET-MR scanner using the stir library

With the introduction of Positron Emission Tomography - Magnetic Resonance (PET-MR) scanners the development of new algorithms and the comparison of the performance of different iterative reconstruction algorithms and the characteristics of the reconstructed images data is relevant. In this work, we perform a quantitative assessment of the currently used ordered subset (OS) algorithms for low-counts PET-MR data taken from a Siemens Biograph mMR scanner using the Software for Tomographic Image Reconstruction (STIR, stir.sf.net). A comparison has been performed in terms of bias and coefficient of variation (CoV). Within the STIR library different algorithms are available, such as Order Subsets Expectation Maximization (OSEM), OS Maximum A Posteriori One Step Late (OSMAPOSL) with Quadratic Prior (QP) and with Median Root Prior (MRP), OS Separable Paraboloidal Surrogate (OSSPS) with QP and Filtered Back-Projection (FBP). In addition, List Mode (LM) reconstruction is available. Corrections for attenuation, scatter and random events are performed using STIR instead of using the scanner. Data from the Hoffman brain phantom are acquired, processed and reconstructed. Clinical data from the thorax of a patient have also been reconstructed with the same algorithms. The number of subsets does not appreciably affect the bias nor the coefficient of variation (CoV=11%) at a fixed sub-iteration number. The percentage relative bias and CoV maximum values for OSMAPOSL-MRP are 10% and 15% at 360 s acquisition and 12% and 15% for the 36 s, whilst for OSMAPOSL-QP they are 6% and 16% for 360 s acquisition and 11% and 23% at 36 s and for OSEM 6% and 11% for the 360 s acquisition and 10% and 15% for the 36 s. Our findings demonstrate that when it comes to low-counts, noise and bias become significant. The methodology for reconstructing Siemens mMR data with STIR is included in the CCP-PET-MR website

Importance of plants with extremely small populations (Psesps) in endemic-rich areas, elements often forgotten in conservation strategies

The distribution of the threatened fern Ophioglossum vulgatum L., a plant with extremely small populations (PSESPs) in Sardinia, is characterized by small disjunct populations with only a few individuals, and little is known about its status in the wild. To provide information for the conservation of O. vulgatum and with the aim to develop an in situ conservation strategy, we investigated its distribution, population size, and habitat. Field surveys confirmed that the species grows in only five localities. Two representative populations were selected for this study (Funtanamela and Gedili), and in each population, all plants were mapped and monitored monthly from April to August over an 8-year period. During the study, the populations had a very low number of reproductive plants and the populations appeared to be in decline, with the total number of plants per population slightly decreased in Gedili while a sharp reduction was recorded in Funtanamela due to wild boar threat. A fence was built in order to protect the site from further damage, but no noticeable signals of recovery were observed. The most urgent conservation requirement for this species is to preserve the threatened habitat of the remnant populations. Further field surveys and research are also required for an improved understanding of the species’ status

Early impairment of contractility reserve in patients with insulin resistance in comparison with healthy subjects

Background: Insulin resistance (IR) is currently considered a crucial cardiovascular (CV) risk factor, which seems to play a dominant role in the evolution toward cardiac and vascular impairment. Early IR-induced cardiac dysfunction can be assessed by Doppler-derived myocardial systolic strain rate (SR) index, measured at baseline and after dobutamine stress echocardiography (DSE).Methods: Thirty IR patients (HOMA-IR = 7 ± 5.2, age 52.6 ± 2.1 years), and 20 healthy, age and sex matched controls were studied. IR had been diagnosed in all patients in the 3 months preceding the study. Dobutamine echocardiography was performed in all subjects to exclude ischemic heart disease, and left ventricular contractile reserve (LVCR) was then assessed. LVCR was evaluated as an increase in the peak of an average longitudinal SR, measured in the basal and mid segments of 2 and 4 chamber ventricular walls.Results: No significant differences between the 2 groups were revealed by baseline echocardiography. In contrast, after DSE a significant decrease of Delta SR was found in the IR group in comparison to the controls (0.54 ± 0.31 s-1vs 1.14 ± 0.45 s-1; p < 0.0001).Conclusions: Our results show that IR, even if isolated and arising within a short time period, not only represents the initial phase of future diabetes, but may adversely affect heart function, as evidenced by the depressed LVCR. Our data strengthen the need for attention to be paid to IR state and for an early therapeutic approach

Recent Progress in STIR 5.0

STIR is an open source software for Emission Tomography data manipulation and image reconstruction, covering both PET and SPECT. In this work recent additions to the STIR code base are highlighted, namely the ability to read General Electric (GE) Raw Data Format 9 (RDF9) files, incorporation of GPU operators for forward and back projection, as well as work towards quantitative imaging for both PET and SPECT

Bifidobacteria Strain Typing by Fourier Transform Infrared Spectroscopy

Fourier transform infrared (FTIR) spectroscopy, a technology traditionally used in chemistry to determine the molecular composition of a wide range of sample types, has gained growing interest in microbial typing. It is based on the different vibrational modes of the covalent bonds between atoms of a given sample, as bacterial cells, induced by the absorption of infrared radiation. This technique has been largely used for the study of pathogenic species, especially in the clinical field, and has been proposed also for the typing at different subspecies levels. The high throughput, speed, low cost, and simplicity make FTIR spectroscopy an attractive technique also for industrial applications, in particular, for probiotics. The aim of this study was to compare FTIR spectroscopy with established genotyping methods, pulsed-field gel electrophoresis (PFGE), whole-genome sequencing (WGS), and multilocus sequence typing (MLST), in order to highlight the FTIR spectroscopy potential discriminatory power at strain level. Our study focused on bifidobacteria, an important group of intestinal commensals generally recognized as probiotics. For their properties in promoting and maintaining health, bifidobacteria are largely marketed by the pharmaceutical, food, and dairy industries. Strains belonging to Bifidobacterium longum subsp. longum and Bifidobacterium animalis subsp. lactis were taken into consideration together with some additional type strains. For B. longum subsp. longum, it was possible to discriminate the strains with all the methods used. Although two isolates were shown to be strictly phylogenetically related, constituting a unique cluster, based on PFGE, WGS, and MLST, no clustering was observed with FTIR. For B. animalis subsp. lactis group, PFGE, WGS, and MLST were non-discriminatory, and only one strain was easily distinguished. On the other hand, FTIR discriminated all the isolates one by one, and no clustering was observed. According to these results, FTIR analysis is not only equivalent to PFGE, WGS, and MLST, but also for some strains, in particular, for B. animalis subsp. lactis group, more informative, being able to differentiate strains not discernible with the other two methods based on phenotypic variations likely deriving from certain genetic changes. Fourier transform infrared spectroscopy has highlighted the possibility of using the cell surface as a kind of barcode making tracing strains possible, representing an important aspect in probiotic applications. Furthermore, this work constitutes the first investigation on bifidobacterial strain typing using FTIR spectroscopy

Theranostic SPECT reconstruction for improved resolution: application to radionuclide therapy dosimetry

BACKGROUND: SPECT-derived dose estimates in tissues of diameter less than 3× system resolution are subject to significant losses due to the limited spatial resolution of the gamma camera. Incorporating resolution modelling (RM) into the SPECT reconstruction has been proposed as a possible solution; however, the images produced are prone to noise amplification and Gibbs artefacts. We propose a novel approach to SPECT reconstruction in a theranostic setting, which we term SPECTRE (single photon emission computed theranostic reconstruction); using a diagnostic PET image, with its superior resolution, to guide the SPECT reconstruction of the therapeutic equivalent. This report demonstrates a proof in principle of this approach. METHODS: We have employed the hybrid kernelised expectation maximisation (HKEM) algorithm implemented in STIR, with the aim of producing SPECT images with PET-equivalent resolution. We demonstrate its application in both a dual 68Ga/177Lu IEC phantom study and a clinical example using 64Cu/67Cu. RESULTS: SPECTRE is shown to produce images comparable in accuracy and recovery to PET with minimal introduction of artefacts and amplification of noise. CONCLUSION: The SPECTRE approach to image reconstruction shows improved quantitative accuracy with a reduction in noise amplification. SPECTRE shows great promise as a method of improving SPECT radioactivity concentrations, directly leading to more accurate dosimetry estimates in small structures and target lesions. Further investigation and optimisation of the algorithm parameters is needed before this reconstruction method can be utilised in a clinical setting

From mining wastes to mineral sources - investigating the REE-bearing occurrences in the Arburèse District (SW Sardinia)

In recent years, the search for possible sources of REE minerals in Europe involved numerous old mine areas with high volumes of mining wastes that may offer significant amounts of Critical Raw Materials (CRMs). In some cases, strong evidence of CRMs anomalous concentrations arises from environmental characterization of wastes, so that an interesting problem is that of finding their sources, i.e., the original CRMs - rich mineral phases in the residual ore. An excellent example is provided by the Arburèse district of SW Sardinia, for about 150 years a major Pb-Zn source in Italy, now an area under study for remediation of its severe environmental problems, including &gt;10 Mt of waste deposits. The district exploited a large system (&gt;10 km) of low-temperature polymetallic veins hosted in Lower Paleozoic siliciclastic rocks belonging to the Variscan Nappe zone, arranged in two main geometrical trends relative to the late Variscan Arbus pluton: “peripheral” and “intersecting”. Recent investigations in the Montevecchio mine area discovered high Zn (up to 2.65 wt.%) and Pb (1.23 wt.%) grades in stratified tailing materials belonging to the Sanna old processing plant. Remarkably, ICP-MS analyses on the same materials revealed total REE+ Y contents attaining about 600 ppm. XRD studies confirmed a tailing composition essentially made of gangue minerals (quartz, siderite and micas) with goethite, baryte and traces of Zn carbonates and Pb sulfates. Chondrite-normalized REE patterns are coherent with the hydrothermal character of the source: however, both the REE mineralogical host(s) in tailings and in the Montevecchio ore are still undetermined. In the search of REE-bearing phases in the ores, some relevant insights are provided by studies on the southern branch of the Arburèse system, where the veins of “peripheral” system are hosted in late Ordovician-Silurian sedimentary sequences. In this part of the district the polymetallic veins assume the character of five-elements (Ni-Co-As-Bi-Ag) veins, with a rich Ni-Co-Fe arsenide – quartz association (1) overprinted by a Zn-Pb-Cu sulfide – siderite – quartz association (2), very similar to that dominating in Montevecchio. Investigations in the Pira Inferida mine sector highlighted the presence of LREE fluorocarbonates (synchysite-Ce and bastnaesite-Ce) and phosphates (monazite) associated with rutile and apatite. LREE minerals have been detected by SEM-EDS as tiny crystals in the quartz-sericitic gangue of the Montevecchio-type (2) mineral association. The same minerals are found in millimetric aggregates in the oxide zone of the veins, sporadically reported by mineral collectors in other mine sites of the same system. Overall, these occurrences, similar to those found in other low-temperature vein systems of Sardinia (e.g., Silius vein system), appear reliable mineral REE sources for Montevecchio mine wastes; they may be therefore used as proxies for REE exploration and assessment in the district

Feasibility of Image Reconstruction from Triple Modality Data of Yttrium-90

The recent implementation of the first clinical triple modality scanner in STIR enables investigation of the possibility of triple modality image reconstruction. Such a tool represents an important step toward the improvement of dosimetry for theranostics, where the exploitation of multi-modality imaging can have an impact on treatment planning and follow-up. To give a demonstration of triple modality image reconstruction we used data from a NEMA phantom that was filled with Yttrium-90 (90Y), which emits Bremsstrahlung photons detectable with SPECT as well as gamma rays that can go through pair production, therefore creating positrons that make PET acquisition possible. The data were acquired with the Mediso AnyScan SPECT/PET/CT. Different ways of including multiple side information using the kernelised expectation maximisation (KEM) and the Hybrid KEM (HKEM) were used and investigated in terms of ROI activity and noise suppression. This work presents an example of application with 90Y but it can be extended to any other radionuclide combination used in Theranostic applications