Comment on "Regularizing capacity of metabolic networks"

In a recent paper, Marr, Muller-Linow and Hutt [Phys. Rev. E 75, 041917 (2007)] investigate an artificial dynamic system on metabolic networks. They find a less complex time evolution of this dynamic system in real networks, compared to networks of reference models. The authors argue that this suggests that metabolic network structure is a major factor behind the stability of biochemical steady states. We reanalyze the same kind of data using a dynamic system modeling actual reaction kinetics. The conclusions about stability, from our analysis, are inconsistent with those of Marr et al. We argue that this issue calls for a more detailed type of modeling

Local interaction scale controls the existence of a non-trivial optimal critical mass in opinion spreading

We study a model of opinion formation where the collective decision of group is said to happen if the fraction of agents having the most common opinion exceeds a threshold value, a \textit{critical mass}. We find that there exists a unique, non-trivial critical mass giving the most efficient convergence to consensus. In addition, we observe that for small critical masses, the characteristic time scale for the relaxation to consensus splits into two. The shorter time scale corresponds to a direct relaxation and the longer can be explained by the existence of intermediate, metastable states similar to those found in [P.\ Chen and S.\ Redner, Phys.\ Rev.\ E \textbf{71}, 036101 (2005)]. This longer time-scale is dependent on the precise condition for consensus---with a modification of the condition it can go away.Comment: 4 pages, 6 figure

Tax evasion dynamics and Zaklan model on Opinion-dependent Network

Within the context of agent-based Monte-Carlo simulations, we study the well-known majority-vote model (MVM) with noise applied to tax evasion on Stauffer-Hohnisch-Pittnauer (SHP) networks. To control the fluctuations for tax evasion in the economics model proposed by Zaklan, MVM is applied in the neighborhood of the critical noise $q_{c}$ to evolve the Zaklan model. The Zaklan model had been studied recently using the equilibrium Ising model. Here we show that the Zaklan model is robust because this can be studied besides using equilibrium dynamics of Ising model also through the nonequilibrium MVM and on various topologies giving the same behavior regardless of dynamic or topology used here.Comment: 14 page, 4 figure

Exploring the assortativity-clustering space of a network's degree sequence

Nowadays there is a multitude of measures designed to capture different aspects of network structure. To be able to say if the structure of certain network is expected or not, one needs a reference model (null model). One frequently used null model is the ensemble of graphs with the same set of degrees as the original network. In this paper we argue that this ensemble can be more than just a null model -- it also carries information about the original network and factors that affect its evolution. By mapping out this ensemble in the space of some low-level network structure -- in our case those measured by the assortativity and clustering coefficients -- one can for example study how close to the valid region of the parameter space the observed networks are. Such analysis suggests which quantities are actively optimized during the evolution of the network. We use four very different biological networks to exemplify our method. Among other things, we find that high clustering might be a force in the evolution of protein interaction networks. We also find that all four networks are conspicuously robust to both random errors and targeted attacks

A network-based threshold model for the spreading of fads in society and markets

We investigate the behavior of a threshold model for the spreading of fads and similar phenomena in society. The model is giving the fad dynamics and is intended to be confined to an underlying network structure. We investigate the whole parameter space of the fad dynamics on three types of network models. The dynamics we discover is rich and highly dependent on the underlying network structure. For some range of the parameter space, for all types of substrate networks, there are a great variety of sizes and life-lengths of the fads -- what one see in real-world social and economical systems

Third flow component as QGP signal

A review of earlier fluid dynamical calculations with QGP show a softening of the directed flow while with hadronic matter this effect is absent. The effect shows up in the reaction plane as enhanced emission which is orthogonal to the directed flow. Thus, it is not shadowed by the deflected projectile and target. As both of these flow components are in the reaction plane these form an enhanced 'elliptic flow' pattern. Recent experimental data at 11 AGeV and above show the same softening, hinting at QGP formation.Comment: 12 pages, Latex, and 3 figures (.eps), 2 style files (.sty

Network dynamics of ongoing social relationships

Many recent large-scale studies of interaction networks have focused on networks of accumulated contacts. In this paper we explore social networks of ongoing relationships with an emphasis on dynamical aspects. We find a distribution of response times (times between consecutive contacts of different direction between two actors) that has a power-law shape over a large range. We also argue that the distribution of relationship duration (the time between the first and last contacts between actors) is exponentially decaying. Methods to reanalyze the data to compensate for the finite sampling time are proposed. We find that the degree distribution for networks of ongoing contacts fits better to a power-law than the degree distribution of the network of accumulated contacts do. We see that the clustering and assortative mixing coefficients are of the same order for networks of ongoing and accumulated contacts, and that the structural fluctuations of the former are rather large.Comment: to appear in Europhys. Let

The diplomat's dilemma: Maximal power for minimal effort in social networks

Closeness is a global measure of centrality in networks, and a proxy for how influential actors are in social networks. In most network models, and many empirical networks, closeness is strongly correlated with degree. However, in social networks there is a cost of maintaining social ties. This leads to a situation (that can occur in the professional social networks of executives, lobbyists, diplomats and so on) where agents have the conflicting objectives of aiming for centrality while simultaneously keeping the degree low. We investigate this situation in an adaptive network-evolution model where agents optimize their positions in the network following individual strategies, and using only local information. The strategies are also optimized, based on the success of the agent and its neighbors. We measure and describe the time evolution of the network and the agents' strategies.Comment: Submitted to Adaptive Networks: Theory, Models and Applications, to be published from Springe

Nonlocal evolution of weighted scale-free networks

We introduce the notion of globally updating evolution for a class of weighted networks, in which the weight of a link is characterized by the amount of data packet transport flowing through it. By noting that the packet transport over the network is determined nonlocally, this approach can explain the generic nonlinear scaling between the strength and the degree of a node. We demonstrate by a simple model that the strength-driven evolution scheme recently introduced can be generalized to a nonlinear preferential attachment rule, generating the power-law behaviors in degree and in strength simultaneously.Comment: 4 pages, 4 figures, final version published in PR

Defining and identifying communities in networks

The investigation of community structures in networks is an important issue in many domains and disciplines. This problem is relevant for social tasks (objective analysis of relationships on the web), biological inquiries (functional studies in metabolic, cellular or protein networks) or technological problems (optimization of large infrastructures). Several types of algorithm exist for revealing the community structure in networks, but a general and quantitative definition of community is still lacking, leading to an intrinsic difficulty in the interpretation of the results of the algorithms without any additional non-topological information. In this paper we face this problem by introducing two quantitative definitions of community and by showing how they are implemented in practice in the existing algorithms. In this way the algorithms for the identification of the community structure become fully self-contained. Furthermore, we propose a new local algorithm to detect communities which outperforms the existing algorithms with respect to the computational cost, keeping the same level of reliability. The new algorithm is tested on artificial and real-world graphs. In particular we show the application of the new algorithm to a network of scientific collaborations, which, for its size, can not be attacked with the usual methods. This new class of local algorithms could open the way to applications to large-scale technological and biological applications.Comment: Revtex, final form, 14 pages, 6 figure