Low-Energy Heavy-Ion Reactions and the Skyrme Effective Interaction

The Skyrme effective interaction, with its multitude of parameterisations, along with its implemen- tation using the static and time-dependent density functional (TDHF) formalism have allowed for a range of microscopic calculations of low-energy heavy-ion collisions. These calculations allow variation of the effective interaction along with an interpretation of the results of this variation informed by a comparison to experimental data. Initial progress in implementing TDHF for heavy-ion collisions necessarily used many approximations in the geometry or the interaction. Over the last decade or so, the implementations have overcome all restrictions, and studies have begun to be made where details of the effective interaction are being probed. This review surveys these studies in low energy heavy-ion reactions, finding significant effects on observables from the form of the spin-orbit interaction, the use of the tensor force, and the inclusion of time-odd terms in the density functional.Comment: submitted to Prog. Part. Nucl. Phy

Scaffolder - Software for Reproducible Genome Scaffolding.

Background: Assembly of short-read sequencing data can result in a fragmented non-contiguous series of genomic sequences. Therefore a common step in a genome project is to join neighboring sequence regions together and fill gaps in the assembly using additional sequences. This scaffolding step, however, is non-trivial and requires manually editing large blocks of nucleotide sequence. Joining these sequences together also hides the source of each region in the final genome sequence. Taken together, these considerations may make reproducing or editing an existing genome build difficult.

Methods: The software outlined here, “Scaffolder,” is implemented in the Ruby programming language and can be installed via the RubyGems software management system. Genome scaffolds are defined using YAML - a data format, which is both human and machine-readable. Command line binaries and extensive documentation are available.

Results: This software allows a genome build to be defined in terms of the constituent sequences using a relatively simple syntax to define the scaffold. This syntax further allows unknown regions to be defined, and adds additional sequences to fill gaps in the scaffold. Defining the genome construction in a file makes the scaffolding process reproducible and easier to edit compared with FASTA nucleotide sequence.

Conclusions: Scaffolder is easy-to-use genome scaffolding software. This tool promotes reproducibility and continuous development in a genome project. Scaffolder can be found at http://next.gs

Nucleon-Nucleon Interactions from Dispersion Relations: Coupled Partial Waves

We consider nucleon-nucleon interactions from chiral effective field theory applying the N/D method. The case of coupled partial waves is now treated, extending Ref. [1] where the uncoupled case was studied. As a result three N/D elastic-like equations have to be solved for every set of three independent partial waves coupled. As in the previous reference the input for this method is the discontinuity along the left-hand cut of the nucleon-nucleon partial wave amplitudes. It can be calculated perturbatively in chiral perturbation theory because it involves only irreducible two-nucleon intermediate states. We apply here our method to the leading order result consisting of one-pion exchange as the source for the discontinuity along the left-hand cut. The linear integral equations for the N/D method must be solved in the presence of L - 1 constraints, with L the orbital angular momentum, in order to satisfy the proper threshold behavior for L>= 2. We dedicate special attention to satisfy the requirements of unitarity in coupled channels. We also focus on the specific issue of the deuteron pole position in the 3S1-3D1 scattering. Our final amplitudes are based on dispersion relations and chiral effective field theory, being independent of any explicit regulator. They are amenable to a systematic improvement order by order in the chiral expansion.Comment: 11 pages. Extends the work of uncoupled partial waves of M. Albaladejo and J. A. Oller, Phys. Rev. C 84, 054009 (2011) to the case of coupled partial waves. This version matches the published version. Discussion about the deuteron enlarged. Some references adde

Progress in strain monitoring of tapestries

This paper reports interdisciplinary research between conservators and engineers designed to enhance the long-term conservation of tapestries (tapestry-weave hangings) on longterm display. The aim is to monitor, measure and document the strain experienced by different areas of a tapestry while it is hanging on display. Initial research has established that damage can be identified in the early stages of its inception, i.e., before it is visible to the naked eye. The paper also reports initial results of strain data visualisation that allows curators and conservators to examine how strain develops, thereby facilitating predictions about the changes in the form or condition of the tapestry. Strain data visualisation also allows the strain process to be recorded, thereby facilitating the effective documentation of display methods and conservation interventions. The paper reports the use of point measurements (using silica optical fibre sensors) and full-field monitoring (using 3-D photogrammetry with digital image correlation (DIC))

Relating adults' lives and learning: participation and engagement in different settings

This report shows how an understanding of language, literacy andnumeracy as social practices can help practitioners to take account oflearners' lives. It demonstrates how people's histories, currentcircumstances and imagined futures can shape their learning andaffect their level of engagement. The study is based on the research ofthe Adult Learners' Lives project in community settings in Blackburn,Lancaster and Liverpool

Long term condition monitoring of tapestries using image correlation

Digital Image Correlation (DIC) is used to extract non-contact full-field three-dimensional displacement and in-plane strains from an historic tapestries. A DIC-based approach is devised that allows the effect of RH variations on a tapestry to be quantified. A historical tapestry has been monitored in a closely controlled environment and in the natural environment. The results revealed that very small variations in RH can have significant effects on strain. An automated long term monitoring approach has been devised to allow strain data to be extracted in real time from tapestries in remote locations. The results show that DIC provides better understanding of the effect of RH fluctuations on strain which will ultimately lead to more insight into the degradation process of historical tapestries. The paper demonstrates the potential for using DIC as a condition monitoring tool

Elliptic Flow, Initial Eccentricity and Elliptic Flow fluctuations in Heavy Ion Collisions at RHIC

We present measurements of elliptic flow and event-by-event fluctuations established by the PHOBOS experiment. Elliptic flow scaled by participant eccentricity is found to be similar for both systems when collisions with the same number of participants or the same particle area density are compared. The agreement of elliptic flow between Au+Au and Cu+Cu collisions provides evidence that the matter is created in the initial stage of relativistic heavy ion collisions with transverse granularity similar to that of the participant nucleons. The event-by-event fluctuation results reveal that the initial collision geometry is translated into the final state azimuthal particle distribution, leading to an event-by-event proportionality between the observed elliptic flow and initial eccentricity.Comment: To appear in the proceedings of the Lake Louise Winter Institute 2007. The proceedings of the institute will be published by World Scientifi