Testing XRF identification of marine washover sediment beds in a Coastal Lake in Southeastern Texas, USA

This study tests the ability of a novel approach to identifying washover beds in coastal lakes. Combined X-Ray Fluorescence (XRF) and cluster analysis was used to identify hurricane washover beds in sediment cores from Clam Lake on the McFaddin National Wildlife Refuge in southeastern Texas. The lake is known to contain washover beds from recent hurricanes, but the washover sediment has similar microfossil, loss-on-ignition and textural characteristics to non-washover sediment and is not readily distinguishable. Sediment cores taken from marshes surrounding the lake do contain visually-recognizable sandy washover beds of Hurricanes Ike, Rita, Carla and Audrey. XRF analysis of these washover beds, combined with cluster analysis, was used to construct elemental fingerprints with the potential to detect washover beds in the lake. Results are promising: multiple washover beds were detected in the lake and tentatively attributed to recent hurricanes. In some lake cores, washover beds likely to be present were not detected by the XRF/clustering technique; in other lake cores, up to nine washover beds were detected. The variation in the number of washover beds probably resulted from bio-turbation, identification of two or more washover beds in a single washover deposit, and washover beds resulting from smaller storms. Valuable outcomes of this study are; 1) it confirms the presence of washover beds in the lake; 2) it provides greater insight into the number, stratigraphic position and thickness of washover deposits; 3) it identifies periods of heightened and diminished overwash activity, and 4) it provides a means of estimating the contribution of washover deposition to sedimentation in the lake. An additional unexpected finding is that long-term sedimentation rates derived from the lake and marsh cores closely match the rate of local sea-level rise, suggesting that sea-level rise may drive sedimentation in the study area

Novel opsin gene variation in large-bodied, diurnal lemurs

Some primate populations include both trichromatic and dichromatic (red-green colour blind) individuals due to allelic variation at the X-linked opsin locus. This polymorphic trichromacy is well described in day-active New World monkeys. Less is known about colour vision in Malagasy lemurs, but, unlike New World monkeys, only some day-active lemurs are polymorphic, while others are dichromatic. The evolutionary pressures underlying these differences in lemurs are unknown, but aspects of species ecology, including variation in activity pattern, are hypothesized to play a role. Limited data on X-linked opsin variation in lemurs make such hypotheses difficult to evaluate. We provide the first detailed examination of X-linked opsin variation across a lemur clade (Indriidae). We sequenced the X-linked opsin in the most strictly diurnal and largest extant lemur, Indri indri, and nine species of smaller, generally diurnal indriids (Propithecus). Although nocturnal Avahi (sister taxon to Propithecus) lacks a polymorphism, at least eight species of diurnal indriids have two or more X-linked opsin alleles. Four rainforest-living taxa-I. indri and the three largest Propithecus species-have alleles not previously documented in lemurs. Moreover, we identified at least three opsin alleles in Indri with peak spectral sensitivities similar to some New World monkeys

Fludarabine, cytarabine, granulocyte colony-stimulating factor, and idarubicin with gemtuzumab ozogamicin improves event-free survival in younger patients with newly diagnosed aml and overall survival in patients with npm1 and flt3 mutations

Purpose To determine the optimal induction chemotherapy regimen for younger adults with newly diagnosed AML without known adverse risk cytogenetics. Patients and Methods One thousand thirty-three patients were randomly assigned to intensified (fludarabine, cytarabine, granulocyte colony-stimulating factor, and idarubicin [FLAG-Ida]) or standard (daunorubicin and Ara-C [DA]) induction chemotherapy, with one or two doses of gemtuzumab ozogamicin (GO). The primary end point was overall survival (OS). Results There was no difference in remission rate after two courses between FLAG-Ida + GO and DA + GO (complete remission [CR] + CR with incomplete hematologic recovery 93% v 91%) or in day 60 mortality (4.3% v 4.6%). There was no difference in OS (66% v 63%; P = .41); however, the risk of relapse was lower with FLAG-Ida + GO (24% v 41%; P < .001) and 3-year event-free survival was higher (57% v 45%; P < .001). In patients with an NPM1 mutation (30%), 3-year OS was significantly higher with FLAG-Ida + GO (82% v 64%; P = .005). NPM1 measurable residual disease (MRD) clearance was also greater, with 88% versus 77% becoming MRD-negative in peripheral blood after cycle 2 (P = .02). Three-year OS was also higher in patients with a FLT3 mutation (64% v 54%; P = .047). Fewer transplants were performed in patients receiving FLAG-Ida + GO (238 v 278; P = .02). There was no difference in outcome according to the number of GO doses, although NPM1 MRD clearance was higher with two doses in the DA arm. Patients with core binding factor AML treated with DA and one dose of GO had a 3-year OS of 96% with no survival benefit from FLAG-Ida + GO. Conclusion Overall, FLAG-Ida + GO significantly reduced relapse without improving OS. However, exploratory analyses show that patients with NPM1 and FLT3 mutations had substantial improvements in OS. By contrast, in patients with core binding factor AML, outcomes were excellent with DA + GO with no FLAG-Ida benefit

Results of a Trial of PET-Directed Therapy for Early-Stage Hodgkin's Lymphoma

BACKGROUND: It is unclear whether patients with early-stage Hodgkin's lymphoma and negative findings on positron-emission tomography (PET) after three cycles of chemotherapy with doxorubicin, bleomycin, vinblastine, and dacarbazine (ABVD) require radiotherapy.METHODS: Patients with newly diagnosed stage IA or stage IIA Hodgkin's lymphoma received three cycles of ABVD and then underwent PET scanning. Patients with negative PET findings were randomly assigned to receive involved-field radiotherapy or no further treatment; patients with positive PET findings received a fourth cycle of ABVD and radiotherapy. This trial assessing the noninferiority of no further treatment was designed to exclude a difference in the 3-year progression-free survival rate of 7 or more percentage points from the assumed 95% progression-free survival rate in the radiotherapy group.RESULTS: A total of 602 patients (53.3% male; median age, 34 years) were recruited, and 571 patients underwent PET scanning. The PET findings were negative in 426 of these patients (74.6%), 420 of whom were randomly assigned to a study group (209 to the radiotherapy group and 211 to no further therapy). At a median of 60 months of follow-up, there had been 8 instances of disease progression in the radiotherapy group, and 8 patients had died (3 with disease progression, 1 of whom died from Hodgkin's lymphoma); there had been 20 instances of disease progression in the group with no further therapy, and 4 patients had died (2 with disease progression and none from Hodgkin's lymphoma). In the radiotherapy group, 5 of the deaths occurred in patients who received no radiotherapy. The 3-year progression-free survival rate was 94.6% (95% confidence interval [CI], 91.5 to 97.7) in the radiotherapy group and 90.8% (95% CI, 86.9 to 94.8) in the group that received no further therapy, with an absolute risk difference of -3.8 percentage points (95% CI, -8.8 to 1.3).CONCLUSIONS: The results of this study did not show the noninferiority of the strategy of no further treatment after chemotherapy with regard to progression-free survival. Nevertheless, patients in this study with early-stage Hodgkin's lymphoma and negative PET findings after three cycles of ABVD had a very good prognosis either with or without consolidation radiotherapy. (Funded by Leukaemia and Lymphoma Research and others; RAPID ClinicalTrials.gov number, NCT00943423.).</p

Measurement of interfacial area per volume for drainage and imbibition

We investigate experimentally the functional relationship between capillary pressure, Pc, wetting phase saturation, S-w, and interfacial area per volume between the wetting and nonwetting phases, awn, for drainage and imbibition processes in micromodels of two-dimensional pore structures. Within the experimental and analysis error (around 10-15%), the resulting P-c-S-w-a(wn) surfaces were the same. This suggests that data obtained from either the drainage process or the imbibition process are sufficient to generate the complete functional relationship among P-c-S-w-a(wn) and that the observed hysteresis in P-c-S-w-a(wn) can be modeled by including interfacial area as an additional state variable

Death and Regeneration of an Amazonian Mangrove Forest by Anthropic and Natural Forces

The Amazon Macrotidal Mangrove Coast contains the most extensive and continuous mangrove belt globally, occupying an area of ~6500 km2 and accounting for 4.2% of global mangroves. The tallest and densest mangrove forests in the Amazon occur on the Bragança Peninsula. However, road construction that occurred in 1973 caused significant mangrove degradation in the area. A spatial-temporal analysis (1986–2019) based on optical, Synthetic Aperture Radar (SAR), drone images, and altimetric data obtained by photogrammetry and validated by a topographic survey were carried out to understand how the construction of a road led to the death of mangroves. The topographic data suggested that this road altered the hydrodynamical flow, damming tidal waters. This process killed at least 4.3 km2 of mangrove trees. Nevertheless, due to natural mangrove recolonization, the area exhibiting degraded mangrove health decreased to ~2.8 km2 in 2003 and ~0.73 km2 in 2019. Climatic extreme events such as “El Niño” and “La Niña” had ephemeral control over the mangrove degradation/regeneration. In contrast, the relative sea-level rise during the last several decades caused long-term mangrove recolonization, expanding mangrove areas from lower to higher tidal flats. Permanently flooded depressions in the study area, created by the altered hydrodynamical flow due to the road, are unlikely to be recolonized by mangroves unless connections are re-established between these depressions with drainage on the Caeté estuary through pipes or bridges to prevent water accumulation between the road and depressions. To minimize impacts on mangroves, this road should have initially been designed to cross mangrove areas on the highest tidal flats and to skirt the channel headwaters to avoid interruption of regular tidal flow

Death and Regeneration of an Amazonian Mangrove Forest by Anthropic and Natural Forces

The Amazon Macrotidal Mangrove Coast contains the most extensive and continuous mangrove belt globally, occupying an area of ~6500 km2 and accounting for 4.2% of global mangroves. The tallest and densest mangrove forests in the Amazon occur on the Bragan&ccedil;a Peninsula. However, road construction that occurred in 1973 caused significant mangrove degradation in the area. A spatial-temporal analysis (1986&ndash;2019) based on optical, Synthetic Aperture Radar (SAR), drone images, and altimetric data obtained by photogrammetry and validated by a topographic survey were carried out to understand how the construction of a road led to the death of mangroves. The topographic data suggested that this road altered the hydrodynamical flow, damming tidal waters. This process killed at least 4.3 km2 of mangrove trees. Nevertheless, due to natural mangrove recolonization, the area exhibiting degraded mangrove health decreased to ~2.8 km2 in 2003 and ~0.73 km2 in 2019. Climatic extreme events such as &ldquo;El Ni&ntilde;o&rdquo; and &ldquo;La Ni&ntilde;a&rdquo; had ephemeral control over the mangrove degradation/regeneration. In contrast, the relative sea-level rise during the last several decades caused long-term mangrove recolonization, expanding mangrove areas from lower to higher tidal flats. Permanently flooded depressions in the study area, created by the altered hydrodynamical flow due to the road, are unlikely to be recolonized by mangroves unless connections are re-established between these depressions with drainage on the Caet&eacute; estuary through pipes or bridges to prevent water accumulation between the road and depressions. To minimize impacts on mangroves, this road should have initially been designed to cross mangrove areas on the highest tidal flats and to skirt the channel headwaters to avoid interruption of regular tidal flow