Diverse fossil epacrids (Styphelioideae; Ericaceae) from early Pleistocene sediments at Stony Creek Basin, Victoria, Australia

There is currently intense interest in the radiation of the scleromorphic groups that dominate the Australian flora, but at present, only Proteaceae and Casuarinaceae have fossil records detailed enough to provide useful evidence on the timing of these radiations. This article records a diverse assemblage of fossil leaves of another major scleromorphic group, the epacrids (subfamily Styphelioideae of Ericaceae, formerly known as Epacridaceae). The fossils are from Stony Creek Basin, in the western uplands of Victoria, Australia, and are of earliest Pleistocene age (ca. 1.6 million years old). They include 19 forms sufficiently distinct as to constitute different species. This diversity is considerably greater than the extant diversity of epacrids in the region. Published taphonomic data are used to argue that the actual diversity of the source vegetation of the fossil flora may have been significantly greater and comparable to the current local species richness of the centers of diversity. Ten of the fossil species are assigned to the largest extant tribe (Styphelieae), eight are assigned to Epacrideae or Archerieae, and one is assigned to Cosmelieae. This evidence is used to argue that substantial radiation of the epacrids had occurred by the beginning of the Pleistocene

Origin, diversification, and classification of the Australasian genus dracophyllum (richeeae, ericaceae)

The genus Dracophyllum Labill. (Ericaceae) has a fragmented distribution in Australasia, but reaches the greatest level of species richness and morphological diversity in New Zealand. We investigated evolutionary processes that contribute to this disparity in species richness by comparing DNA sequences from members of Dracophyllum, its close relatives Richea Labill. and Sphenotoma R. Br. ex Sweet (together constituting tribe Richeeae Crayn & Quinn), along with more distant relatives in the Ericaceae. We created complementary data sets for the chloroplast-encoded genes matK and rbcL. Parsimony, Bayesian, and maximum likelihood analyses were conducted to assess the robustness of our phylogenetic inferences. The results were largely congruent and, when analyzed in combination, provided greater resolution. In our analyses, tribe Richeeae formed a monophyletic group that diverged during the Eocene (at least 33.3 million years ago [Ma]) with a crown radiation during the Early Miocene (at least 16.5 Ma) that resulted in two disjunct lineages. This date corresponds roughly to the onset of aridification in central Australia. The southern Western Australian genus Sphenotoma formed an isolated evolutionary lineage, while Dracophyllum and Richea together formed a second lineage restricted to eastern Australia, Lord Howe Island, New Caledonia, and New Zealand. The relationships of the Tasmanian endemic, D. milliganii Hook. f., remain an enigma. It was ambiguously placed as sister to Sphenotoma or to the Dracophyllum Richea elude. We recovered two distinct lineages, traditionally recognized as Richea sect. Cystanthe (R. Br.) Benth. and Richea sect. Dracophylloides Benth., which were nested within Dracophyllum. The Lord Howe Island endemic, D. fitzgeraldii F. Muell., emerged as sister to an eastern Australian clade of Dracophyllum. Our evidence suggests that the New Caledonian and New Zealand species of Dracophyllum dispersed from Australia; we document two independent episodes of long-distance dispersal in the Late Miocene to Early Pliocene. Low levels of sequence divergence suggest a rapid and recent species radiation in these two island archipelagos largely within the last three to six million years. This radiation accompanied Pliocene uplift of the New Zealand Southern Alps and episodes of glaciation during the Pleistocene. Because Dracophyllum is paraphyletic and Richea is polyphyletic, the taxonomic circumscription of these genera requires revision

Understanding seed dormancy and germination aids conservation of rainforest species from tropical montane cloud forest: a case study confirming morphophysiological dormancy in the genus Tasmannia

Context: Seed dormancy is one issue hindering implementation of conservation actions for rainforest species. Aims: We studied dormancy and germination in Tasmannia sp. Mt Bellenden Ker and Tasmannia membranea, two tropical montane rainforest species threatened by climate change, to develop a better understanding of dormancy in the species and the genus. Methods: Dormancy was classified for T. sp. Mt Bellenden Ker on the basis of an imbibition test, analysis of embryo to seed length (E:S) ratios and germination in response to the following four dormancy-breaking treatments: (I) scarification of the seedcoat near the micropylar end; (2) removal of the seedcoat; (3) application of 100 mg L(-1)or (4) 500 mg L-1 gibberellic acid. The most effective treatment was then tested on T. membranea. The requirement for light for germination was also assessed. Key results: Both scarified and intact seeds imbibed water. Initial E:S ratios were <0.22 for both species and increased up to 0.74 after 40 days, just before radicle emergence, for T. sp. Mt Bellenden Ker. Germination proportions were significantly higher in Treatments 1 and 2 than the remaining treatments for T. sp. Mt Bellenden Ker; T. membranea responded similarly well to Treatment 1. Germination under alternating light/dark conditions was slightly, but not significantly, greater than germination in the dark alone. Conclusions: Both species have morphophysiological dormancy and treatments that remove seedcoat resistance to embryo growth facilitate germination. These treatments may improve germination in other species from the genus Tasmannia. Implications: This knowledge will aid the germination of seeds to implement conservation strategies for Tasmannia spp

Contrasting photosynthetic characteristics of forest vs. savanna species (Far North Queensland, Australia)

Forest and savanna are the two dominant vegetation types of the tropical regions with very few tree species common to both. At a broad scale, it has long been recognised that the distributions of these two biomes are principally governed by precipitation and its seasonality, but with soil physical and chemical properties also potentially important. For tree species drawn from a range of forest and savanna sites in tropical Far North Queensland, Australia, we compared leaf traits of photosynthetic capacity, structure and nutrient concentrations. Area-based photosynthetic capacity was higher for the savanna species with a steeper slope to the photosynthesis ← nitrogen (N) relationship compared with the forest group. Higher leaf mass per unit leaf area for the savanna trees derived from denser rather than thicker leaves and did not appear to restrict rates of light-saturated photosynthesis when expressed on either an area or mass basis. Median ratios of foliar N to phosphorus (P) were relatively high (>20) at all sites, but we found no evidence for a dominant P limitation of photosynthesis for either forest or savanna trees. A parsimonious mixed-effects model of area-based photosynthetic capacity retained vegetation type and both N and P as explanatory terms. Resulting model-fitted predictions suggested a good fit to the observed data (R2 Combining double low line 0.82). The model's random component found variation in area-based photosynthetic response to be much greater among species (71% of response variance) than across sites (9%). These results suggest that, on a leaf-area basis, savanna trees of Far North Queensland, Australia, are capable of photosynthetically outperforming forest species at their common boundaries.This work was supported by the UK Natural Environment Research Council (reference NE/F002165/1), a Royal Society of London UK–Australia Exchange Award to Jon Lloyd, and the Australian Research Council (reference DP0986823)

Sunlight and red to far-red ratio impact germination of tropical montane cloud forest species

Context: Australia’s tropical montane cloud forests (TMCF) exhibit exceptional species richness and endemism. Determinants of regeneration via seed of these species are next to unknown, limiting our ability to quantify and project their vulnerability to climate change. The ratio of red to far-red light (R:FR) has been shown to influence seed germination of many tropical species.Aims: We investigated germination of six previously unstudied TMCF species in relation to the presence or absence of light (light/dark) and light quality (R:FR). We hypothesised that increased R:FR would lead to increased germination and that small-seeded species would be more likely to have a light requirement and be less sensitive to R:FR compared to larger-seeded species.Methods: Sunlight and polyester filters were used to create a gradient of R:FR ranging from 0.1 to 1.14. Seeds were also sown in constant darkness.Key results: Across species we saw varying germination responses. Three of the four smallest-seeded species exhibited an absolute light requirement for germination and did not discriminate between different R:FR. Germination of the small-seeded TMCF endemic Dracophyllum increased exponentially with increasing R:FR. Germination of the largest-seeded species was inhibited by both low and high R:FR, and germination was higher in constant darkness than diurnal light/dark. All six species were able to germinate at remarkably low R:FR values.Conclusions: Light affects seed germination of Australia’s TMCF plant species in a variety of ways.Implications: The findings of this study provide insights into plant recruitment in situ, and the acclimation potential of these species under reduced R:FR predicted for the future

Environmental regulation of carbon isotope composition and crassulacean acid metabolism in three plant communities along a water availability gradient

Expression of crassulacean acid metabolism (CAM) is characterized by extreme variability within and between taxa and its sensitivity to environmental variation. In this study, we determined seasonal fluctuations in CAM photosynthesis with measurements of nocturnal tissue acidification and carbon isotopic composition (δ13C) of bulk tissue and extracted sugars in three plant communities along a precipitation gradient (500, 700, and 1,000 mm year−1) on the Yucatan Peninsula. We also related the degree of CAM to light habitat and relative abundance of species in the three sites. For all species, the greatest tissue acid accumulation occurred during the rainy season. In the 500 mm site, tissue acidification was greater for the species growing at 30% of daily total photon flux density (PFD) than species growing at 80% PFD. Whereas in the two wetter sites, the species growing at 80% total PFD had greater tissue acidification. All species had values of bulk tissue δ13C less negative than −20‰, indicating strong CAM activity. The bulk tissue δ13C values in plants from the 500 mm site were 2‰ less negative than in plants from the wetter sites, and the only species growing in the three communities, Acanthocereus tetragonus (Cactaceae), showed a significant negative relationship between both bulk tissue and sugar δ13C values and annual rainfall, consistent with greater CO2 assimilation through the CAM pathway with decreasing water availability. Overall, variation in the use of CAM photosynthesis was related to water and light availability and CAM appeared to be more ecologically important in the tropical dry forests than in the coastal dune

Genomic insights into rapid speciation within the world’s largest tree genus Syzygium

Species radiations, despite immense phenotypic variation, can be difficult to resolve phylogenetically when genetic change poorly matches the rapidity of diversification. Genomic potential furnished by palaeopolyploidy, and relative roles for adaptation, random drift and hybridisation in the apportionment of genetic variation, remain poorly understood factors. Here, we study these aspects in a model radiation, Syzygium, the most species-rich tree genus worldwide. Genomes of 182 distinct species and 58 unidentified taxa are compared against a chromosome-level reference genome of the sea apple, Syzygium grande. We show that while Syzygium shares an ancient genome doubling event with other Myrtales, little evidence exists for recent polyploidy events. Phylogenomics confirms that Syzygium originated in Australia-New Guinea and diversified in multiple migrations, eastward to the Pacific and westward to India and Africa, in bursts of speciation visible as poorly resolved branches on phylogenies. Furthermore, some sublineages demonstrate genomic clines that recapitulate cladogenetic events, suggesting that stepwise geographic speciation, a neutral process, has been important in Syzygium diversification

Genomic insights into rapid speciation within the world's largest tree genus Syzygium

The relative importance of the mechanisms underlying species radiation remains unclear. Here, the authors combine reference genome assembly and population genetics analyses to show that neutral forces have contributed to the radiation of the most species-rich tree genus Syzygium. Species radiations, despite immense phenotypic variation, can be difficult to resolve phylogenetically when genetic change poorly matches the rapidity of diversification. Genomic potential furnished by palaeopolyploidy, and relative roles for adaptation, random drift and hybridisation in the apportionment of genetic variation, remain poorly understood factors. Here, we study these aspects in a model radiation, Syzygium, the most species-rich tree genus worldwide. Genomes of 182 distinct species and 58 unidentified taxa are compared against a chromosome-level reference genome of the sea apple, Syzygium grande. We show that while Syzygium shares an ancient genome doubling event with other Myrtales, little evidence exists for recent polyploidy events. Phylogenomics confirms that Syzygium originated in Australia-New Guinea and diversified in multiple migrations, eastward to the Pacific and westward to India and Africa, in bursts of speciation visible as poorly resolved branches on phylogenies. Furthermore, some sublineages demonstrate genomic clines that recapitulate cladogenetic events, suggesting that stepwise geographic speciation, a neutral process, has been important in Syzygium diversification.Peer reviewe

Genomic insights into rapid speciation within the world's largest tree genus Syzygium

Acknowledgements Y.W.L. was supported by a postgraduate scholarship research grant from the Ministry of National Development, Singapore awarded through the National Parks Board, Singapore (NParks; NParks’ Garden City Fund). Principal research funding from NParks and the School of Biological Sciences (SBS), Nanyang Technological University (NTU), Singapore, is acknowledged. We thank Peter Preiser, Associate Vice President for Biomedical and Life Sciences, for facilitating NTU support, and Kenneth Er, CEO of NParks, for facilitating research funding through that organisation. V.A.A. and C.L. were funded by SBS, NTU for a one-year research leave. V.A.A. and C.L. also acknowledge support from the United States National Science Foundation (grants 2030871 and 1854550, respectively). S.R. was supported by a postdoctoral research fellowship under the NTU Strategic Plant Programme. S.R. and N.R.W.C. acknowledge funding from NTU start-up and the Academy of Finland (decisions 318288, 319947) grants to J.S. Fieldwork conducted by Y.W.L. was supported by an Indonesian Government RISTEK research permit (Application ID: 1517217008) and an Access License from the Sabah State government [JKM/MBS.1000-2/2JLD.7(84)]. T.N.C.V. is grateful to the Assemblée de la Province Nord and Assemblée de la Province Sud (New Caledonia) for facilitating relevant collection permits. A.N. was partly supported by the Research Project Promotion Grant (Strategic Research Grant No. 17SP01302) from the University of the Ryukyus, and partly by the Environment Research and Technology Development Fund (JPMEERF20204003) from the Environmental Restoration and Conservation Agency of Japan. Fieldwork in Fiji conducted by R.B. was hosted and facilitated by Elina Nabubuniyaka-Young (The Pacific Community’s Centre for Pacific Crops and Trees, Fiji). We thank the NTU-Smithsonian Partnership for tree data obtained for the Bukit Timah Nature Reserve (BTNR) long-term forest dynamics plots. Administrative support provided by Mui Hwang Khoo-Woon and Peter Ang at the molecular laboratory of the Singapore Botanic Gardens (SBG) is acknowledged. Rosie Woods and Imalka Kahandawala (DNA and Tissue Bank, Royal Botanic Gardens, Kew) facilitated additional DNA samples. Daniel Thomas (SBG) and Yan Yu (Sichuan University) commented on biogeographical analyses. NovogeneAIT in Singapore is acknowledged for personalised sequencing service.Peer reviewedPublisher PD