Design methodology for workload-aware loop scheduling strategies based on genetic algorithm and simulation

International audienceIn high-performance computing, the application's workload must be evenly balanced among threads to deliver cutting-edge performance and scalability. In OpenMP, the load balancing problem arises when scheduling loop iterations to threads. In this context, several scheduling strategies have been proposed, but they do not take into account the input workload of the application and thus turn out to be suboptimal. In this work, we introduce a design methodology to propose, study, and assess the performance of workload-aware loop scheduling strategies. In this methodology, a genetic algorithm is employed to explore the state space solution of the problem itself and to guide the design of new loop scheduling strategies, and a simulator is used to evaluate their performance. As a proof of concept, we show how the proposed methodology was used to propose and study a new workload-aware loop scheduling strategy named smart round-robin (SRR). We implemented this strategy into GNU Compiler Collection's OpenMP runtime. We carry out several experiments to validate the simulator and to evaluate the performance of SRR. Our experimental results show that SRR may deliver up to 37.89% and 14.10% better performance than OpenMP's dynamic loop scheduling strategy in the simulated environment and in a real-world application kernel, respectively

Using The Nanvix Operating System in Undergraduate Operating System Courses

National audienceOperating Systems (OSs) have an important position in the Computer Science curriculum. When students face this subject, they study core concepts, mechanisms and strategies that apply to several fields. To support practical lectures in an OSs course, instructors may adopt an OS on which students can work, exercising their knowledge and enhancing their practical skills. In this context, we present Nanvix, a new OS designed to address this use in undergraduate OSs courses. We introduce a flexible assignment-based teaching methodology for our OS, and we assess the effectiveness of this methodology by applying it in the OSs course of the Pontifical Catholic University of Minas Gerais. When using Nanvix, the average score of the students in the course increased in 11.2%, and the failure rate dropped 47.7%. Moreover, we observed that with Nanvix students got more motivated and interested in the OSs field

BinLPT: A Novel Workload-Aware Loop Scheduler for Irregular Parallel Loops

National audienceWorkload-aware loop schedulers were introduced to deliver better performance than classical strategies, but they present limitations on work-load estimation, chunk scheduling and integrability with applications. Targeting these challenges, in this work we propose a novel workload-aware loop sched-uler that is called BinLPT and it is based on three features. First, it relies on some user-supplied estimation of the workload of the target parallel loop. Second , BinLPT uses a greedy bin packing heuristic to adaptively partition the iteration space in several chunks. The maximum number of chunks to be produced is a parameter that may be fine-tuned. Third, it schedules chunks of iterations using a hybrid scheme based on the LPT rule and on-demand scheduling. We integrated BinLPT in OpenMP, and we evaluated its performance in a large-scale NUMA machine using a synthetic kernel and 3D N-Body Simulations. Our results revealed that BinLPT improves performance over OpenMP's strategies by up to 45.13% and 37.15% in the synthetic and application kernels, respectively

RMem: An OS Service for Transparent Remote Memory Access in Lightweight Manycores

International audienceLightweight manycores deliver high performance and scal-ability at low power consumption. However, architectural intricacies of these processors impose programmability challenges that keep them away from mass adoption. While several efforts aim at introducing parallel programming environments to lightweight manycores, few initiatives are concerned about how to design rich Operating Systems (OSs) to them. In this work, we focus on the open challenges that arise from constrained memory subsystems of lightweight manycores, such as the presence of multiple address spaces and limited on-chip memory. To cope with transparent data access in this scenario, we introduce an OS service, named RMem. This service provides a shared memory abstraction over multiple address spaces and exposes system calls that enable one-sided communication on top of this abstraction. We implemented a prototype of our service in the Nanvix research OS, and we deployed the system the Kalray MPPA-256 lightweight manycore. Our experimental results with a microbenchmark unveiled that, while exposing an easier-to-program interface, the RMem Service may deliver about 91% of the write performance and up to 2.4× better read performance than the primitives in the libraries of the experimental platform

Pathogenicity of psychrotolerant strains of Antarctic Pseudogmynoascus fungi reveals potential opportunistic profiles

Recent studies have demonstrated the presence of fungal taxa in the extreme ecosystems of Antarctica that are known to opportunistically infect humans and animals. Among these are members of the genus Pseudogymnoascus, including some that are genetically similar to P. destructans, known to be pathogenic to bats. We evaluated the in vitro and in vivo pathogenic potential of 11 Pseudogymnoascus spp. strains recovered from Antarctica. All strains were able to grow at temperatures up to 28 °C and displayed in vitro pathogenicity through hemolytic activity, growth at different pH levels, production of hydrolytic enzymes, spore diameters, tolerance to oxidative stress, hypoxia, and halotolerance. Among them, Pseudogymnoascus sp. UFMG 8532 exhibited strong in vitro pathogenicity and in preliminary in vivo assay killed 100 % of Tenebrio molitor larvae within one day. The pathogenicity of the same strain was also tested using immunosuppressed BALB/c mouse models. Survival of BALB/c mice was affected, with oscillations between weight gain and loss, and impacts on sensory function, reflexes and autonomic function. Histopathological data from the organs of infected mice showed evidence of inflammatory processes, with numerous neutrophils, a small number of macrophages, fluid accumulation inside the lungs and intense hyperemia. Our results indicate that Antarctic Pseudogymnoascus spp. strains obtained from various substrates/habitats in maritime Antarctica may possess intrinsic virulence factors and pathogenic potential for immunosuppressed animals and humans in the region. Given that the Antarctic environment is an important reservoir for Pseudogymnoascus species, which display growth performance across a range of temperatures, it is possible that increasing temperatures in the maritime Antarctic could activate dormant genes or biochemical pathways, select virulent species and/or strains, and facilitate their spread within and beyond the region. The ability of Pseudogymnoascus species to grow slowly even at 28°C, coupled with their potential in vitro and in vivo virulence factors, suggests that these fungi might be undergoing an opportunistic transition due to the effects of climate change on the Antarctic Peninsula

Programmable multi-cluster noc architecture to support collective communication patterns

As próximas gerações de processadores many-core exigem que novas abordagens no projeto de arquitetura de processadores sejam propostas. Neste novo contexto, as redes de comunicação intra-chip são importantes para garantir o desempenho dos programas. Soluções tradicionais de interconexão possuem limites físicos que comprometem a escalabilidade e o desempenho no processamento de aplicações paralelas de diversos tipos. A alternativa apontada pelo estado da arte é a Network-on-Chip (NoC) composta por roteadores e outros elementos de rede capazes de prover comunicação escalável e de alto desempenho. No entanto, as cargas de trabalho geram padrões de comunicação diferentes que podem influenciar no desempenho da rede. Existem pesquisas que abordam metodologias de projeto dedicado de NoCs em função de domínios de aplicações específicos. Apesar de uma NoC dedicada possuir um alto desempenho, cargas de trabalho paralelas geram padrões de comunicação coletiva que mudam dinamicamente. Com o objetivo de aumentar a flexibilidade de redes-em-chip, trabalhos correlatos utilizam conceitos de computação reconfigurável para aumentar a capacidade da arquitetura da NoC se adaptar em função de padrões de comunicação. Alguns trabalhos focam na programação de FPGAs e outros em ASICs polimórficos. O objetivo desta tese é propor uma arquitetura de Network-on-Chip que suporte múltiplos clusters de núcleos de processamento através de roteadores programáveis e de topologias reconfiguráveis. Cada roteador é composto por uma chave crossbar reconfigurável capaz de implementar topologias dinamicamente através do uso de um segundo nível de reconfiguração. Os roteadores possuem processadores de rede que aumentam a flexibilidade e a capacidade da NoC se adaptar ao padrão de comunicação através de programas que monitoram e gerenciam a rede. Portanto, a contribuição da tese é a Arquitetura de NoC Programável Baseada em Múltiplos Clusters de Cores. Os resultados baseados em modelos analíticos e de simulação, e cargas de trabalho artificiais e naturais, mostram que a arquitetura da NoC possui um alto desempenho e vazão de pacotes, proporcionados pela adaptação de topologias e redução da influência da rede na comunicação. A ocupação em FPGA mostra que os roteadores programáveis possuem tamanho similares a NoCs com arquiteturas tradicionais para gerenciamento de mesma quantidade de núcleos. A menor utilização de buffers de entrada resulta em uma melhor eficiência no consumo de potência e energia. Portanto, através dos modelos de projeto e avaliação foi possível verificar através dos resultados que a arquitetura da MCNoC é uma alternativa para suportar padrões de comunicações coletivas.For the next generation of many-core processors, new design methodologies must be proposed. In this context, on-chip interconnections are important to assure the program performance. Traditional approaches of interconnections have physical constraints that reduce the scalability and performance to process parallel applications. The state-of-theart points out to the Network-on-Chip (NoC), which consists of routers and other network devices capable of increasing the communication scalability and performance. However, workloads produce different types of communication patterns, which can influence the network performance. There are research works that explore applicationspecific NoC design to response the demand on specific workloads. Although a dedicated NoC has a high performance, parallel workloads have different collective communication patterns. In order to increase the flexibility of NoCs, related works use concepts of reconfigurable computing to add architecture adaptability to support dynamic communication patterns. Some works focus on FPGA-based reconfiguration and others on polymorphic ASICs. The goal of this thesis is to propose an alternative Programmable Multi-Cluster NoC architecture. Each router consists of a reconfigurable crossbar switch capable of implementing dynamic topologies through a second reconfiguration level. The routers have network processors that increase the flexibility and the NoC adaptability through management programs in order to support different workloads. Therefore, the contribution of this thesis is the following: A Programmable Multi-Cluster NoC (MCNoC) architecture. Based on analytical and simulation models, and artificial and natural workloads, results show the high performance and throughput for the proposed NoC architecture, due to the adaptable topologies and low network latency impact. Results based on FPGA shows a similar component utilization considering the proposed programmable NoC relative to conventional NoC architectures for the same number of processing cores. The low utilization of input buffers improves the efficiency of power and energy consumption. Therefore, through design and evaluation models, the NoC proposal was verified and the results point out the MCNoC as an alternative architecture to support collective communication patterns

Programmable multi-cluster noc architecture to support collective communication patterns

As próximas gerações de processadores many-core exigem que novas abordagens no projeto de arquitetura de processadores sejam propostas. Neste novo contexto, as redes de comunicação intra-chip são importantes para garantir o desempenho dos programas. Soluções tradicionais de interconexão possuem limites físicos que comprometem a escalabilidade e o desempenho no processamento de aplicações paralelas de diversos tipos. A alternativa apontada pelo estado da arte é a Network-on-Chip (NoC) composta por roteadores e outros elementos de rede capazes de prover comunicação escalável e de alto desempenho. No entanto, as cargas de trabalho geram padrões de comunicação diferentes que podem influenciar no desempenho da rede. Existem pesquisas que abordam metodologias de projeto dedicado de NoCs em função de domínios de aplicações específicos. Apesar de uma NoC dedicada possuir um alto desempenho, cargas de trabalho paralelas geram padrões de comunicação coletiva que mudam dinamicamente. Com o objetivo de aumentar a flexibilidade de redes-em-chip, trabalhos correlatos utilizam conceitos de computação reconfigurável para aumentar a capacidade da arquitetura da NoC se adaptar em função de padrões de comunicação. Alguns trabalhos focam na programação de FPGAs e outros em ASICs polimórficos. O objetivo desta tese é propor uma arquitetura de Network-on-Chip que suporte múltiplos clusters de núcleos de processamento através de roteadores programáveis e de topologias reconfiguráveis. Cada roteador é composto por uma chave crossbar reconfigurável capaz de implementar topologias dinamicamente através do uso de um segundo nível de reconfiguração. Os roteadores possuem processadores de rede que aumentam a flexibilidade e a capacidade da NoC se adaptar ao padrão de comunicação através de programas que monitoram e gerenciam a rede. Portanto, a contribuição da tese é a Arquitetura de NoC Programável Baseada em Múltiplos Clusters de Cores. Os resultados baseados em modelos analíticos e de simulação, e cargas de trabalho artificiais e naturais, mostram que a arquitetura da NoC possui um alto desempenho e vazão de pacotes, proporcionados pela adaptação de topologias e redução da influência da rede na comunicação. A ocupação em FPGA mostra que os roteadores programáveis possuem tamanho similares a NoCs com arquiteturas tradicionais para gerenciamento de mesma quantidade de núcleos. A menor utilização de buffers de entrada resulta em uma melhor eficiência no consumo de potência e energia. Portanto, através dos modelos de projeto e avaliação foi possível verificar através dos resultados que a arquitetura da MCNoC é uma alternativa para suportar padrões de comunicações coletivas.For the next generation of many-core processors, new design methodologies must be proposed. In this context, on-chip interconnections are important to assure the program performance. Traditional approaches of interconnections have physical constraints that reduce the scalability and performance to process parallel applications. The state-of-theart points out to the Network-on-Chip (NoC), which consists of routers and other network devices capable of increasing the communication scalability and performance. However, workloads produce different types of communication patterns, which can influence the network performance. There are research works that explore applicationspecific NoC design to response the demand on specific workloads. Although a dedicated NoC has a high performance, parallel workloads have different collective communication patterns. In order to increase the flexibility of NoCs, related works use concepts of reconfigurable computing to add architecture adaptability to support dynamic communication patterns. Some works focus on FPGA-based reconfiguration and others on polymorphic ASICs. The goal of this thesis is to propose an alternative Programmable Multi-Cluster NoC architecture. Each router consists of a reconfigurable crossbar switch capable of implementing dynamic topologies through a second reconfiguration level. The routers have network processors that increase the flexibility and the NoC adaptability through management programs in order to support different workloads. Therefore, the contribution of this thesis is the following: A Programmable Multi-Cluster NoC (MCNoC) architecture. Based on analytical and simulation models, and artificial and natural workloads, results show the high performance and throughput for the proposed NoC architecture, due to the adaptable topologies and low network latency impact. Results based on FPGA shows a similar component utilization considering the proposed programmable NoC relative to conventional NoC architectures for the same number of processing cores. The low utilization of input buffers improves the efficiency of power and energy consumption. Therefore, through design and evaluation models, the NoC proposal was verified and the results point out the MCNoC as an alternative architecture to support collective communication patterns