Baseline information on prokaryotic and microeukaryotic plankton communities inside and outside of Indonesian marine lakes

Marine lakes represent a unique and globally rare aquatic environment characterised by lower salinities and pH and higher temperatures than the surrounding open water environment. Here we provide baseline data on planktonic communities of Archaea, Bacteria and microeukaryotes inside and outside (open water habitat) of three marine lakes (Kakaban, Haji Buang and Tanah Bamban) in the Berau region of Indonesia. Compositional variation was highly congruent with the major axis of variation separating open water from marine lake samples for all three domains. Planktonic Archaea mainly consisted of OTUs assigned to Euryarchaeota that were closely related to organisms in Genbank previously obtained from seawater samples. The majority of archaeal OTUs were most abundant in open water habitat with a few OTUs abundant in all habitats. Most bacterial sequences were assigned to Proteobacteria, Cyanobacteria and Bacteroidetes with the percentage of Cyanobacteria highest in two of the marine lakes and lowest in the remaining lake (Tanah Bamban). In contrast to Archaea, there were a number of bacterial OTUs that were markedly more abundant in marine lake habitat. Most microeukaryote sequences were assigned to the Alveolata, Stramenopiles, Opisthokonta, Archaeplastida and Hacrobia. As was the case with Bacteria, a number of abundant microeukaryote OTUs were more abundant in marine lake habitat. Our results thus indicate similar compositional responses to the environmental conditions in marine lake habitat across the major domains of life and point to marine lakes harbouring distinct microbial communities.publishe

GHRS and ORFEUS-II Observations of the Highly Ionized Interstellar Medium Toward ESO141-055

We present Goddard High Resolution Spectrograph and ORFEUS-II measurements of Si IV, CIV, N V, and O VI absorption in the interstellar medium of the Galactic disk and halo toward the nucleus of the Seyfert galaxy ESO141-055. The high ionization absorption is strong, with line strengths consistent with the spectral signature expected for hot (log T = 5-6) collisionally ionized gas in either a ``Galactic fountain'' or an inhomogeneous medium containing a mixture of conductive interfaces and turbulent mixing layers. The total O VI column density of log N ~ 15 suggests that the scale height of O VI is large (>3 kpc) in this direction. Comparison of the high ion column densities with measurements for other sight lines indicates that the highly ionized gas distribution is patchy. The amount of O VI perpendicular to the Galactic plane varies by at least a factor of ~4 among the complete halo sight lines thus far studied. In addition to the high ion absorption, lines of low ionization species are also present in the spectra. With the possible exception of Ar I, which may have a lower than expected abundance resulting from partial photoionization of gas along the sight line, the absorption strengths are typical of those expected for the warm, neutral interstellar medium. The sight line intercepts a cold molecular cloud with log N(H2) ~ 19. The cloud has an identifiable counterpart in IRAS 100-micron emission maps of this region of the sky. We detect a Ly-alpha absorber associated with ESO141-055 at z = 0.03492. This study presents an enticing glimpse into the interstellar and intergalactic absorption patterns that will be observed at high spectral resolution by the Far Ultraviolet Spectroscopic Explorer.Comment: 24 pages + 8 figures, uses aaspp4.sty. Accepted for publication in Ap

Methylmercury neurotoxicity in Amazonian children downstream from gold mining.

In widespread informal gold mining in the Amazon Basin, mercury is used to capture the gold particles as amalgam. Releases of mercury to the environment have resulted in the contamination of freshwater fish with methylmercury. In four comparable Amazonian communities, we examined 351 of 420 eligible children between 7 and 12 years of age. In three Tapajós villages with the highest exposures, more than 80% of 246 children had hair-mercury concentrations above 10 microg/g, a limit above which adverse effects on brain development are likely to occur. Neuropsychological tests of motor function, attention, and visuospatial performance showed decrements associated with the hair-mercury concentrations. Especially on the Santa Ana form board and the Stanford-Binet copying tests, similar associations were also apparent in the 105 children from the village with the lowest exposures, where all but two children had hair-mercury concentrations below 10 microg/g. Although average exposure levels may not have changed during recent years, prenatal exposure levels are unknown, and exact dose relationships cannot be generated from this cross-sectional study. However, the current mercury pollution seems sufficiently severe to cause adverse effects on brain development

Scattering of Phonons by a Vortex in a Superfluid

Recent work gives a transverse force on an isolated moving vortex which is independent of the normal fluid velocity, but it is widely believed that the asymmetry of phonon scattering by a vortex leads to a transverse force dependent on the relative motion of the normal component and the vortex. We show that a widely accepted derivation of the transverse force is in error, and that a careful evaluation leads to a much smaller transverse force. We argue that a different approach is needed to get the correct expression. \pacs{67.40.Vs,67.57.Fg,47.37.+q,47.32.Cc}Comment: 4 page

Neighborhoods of trees in circular orderings

In phylogenetics, a common strategy used to construct an evolutionary tree for a set of species X is to search in the space of all such trees for one that optimizes some given score function (such as the minimum evolution, parsimony or likelihood score). As this can be computationally intensive, it was recently proposed to restrict such searches to the set of all those trees that are compatible with some circular ordering of the set X. To inform the design of efficient algorithms to perform such searches, it is therefore of interest to find bounds for the number of trees compatible with a fixed ordering in the neighborhood of a tree that is determined by certain tree operations commonly used to search for trees: the nearest neighbor interchange (nni), the subtree prune and regraft (spr) and the tree bisection and reconnection (tbr) operations. We show that the size of such a neighborhood of a binary tree associated with the nni operation is independent of the tree’s topology, but that this is not the case for the spr and tbr operations. We also give tight upper and lower bounds for the size of the neighborhood of a binary tree for the spr and tbr operations and characterize those trees for which these bounds are attained

Spitzer Observations of 3C Quasars and Radio Galaxies: Mid-Infrared Properties of Powerful Radio Sources

We have measured mid-infrared radiation from an orientation-unbiased sample of 3CRR galaxies and quasars at redshifts 0.4 < z < 1.2 with the IRS and MIPS instruments on the Spitzer Space Telescope. Powerful emission (L_24micron > 10^22.4 W/Hz/sr) was detected from all but one of the sources. We fit the Spitzer data as well as other measurements from the literature with synchrotron and dust components. The IRS data provide powerful constraints on the fits. At 15 microns, quasars are typically four times brighter than radio galaxies with the same isotropic radio power. Based on our fits, half of this difference can be attributed to the presence of non-thermal emission in the quasars but not the radio galaxies. The other half is consistent with dust absorption in the radio galaxies but not the quasars. Fitted optical depths are anti-correlated with core dominance, from which we infer an equatorial distribution of dust around the central engine. The median optical depth at 9.7 microns for objects with core-dominance factor R > 10^-2 is approximately 0.4; for objects with R < 10^-2, it is 1.1. We have thus addressed a long-standing question in the unification of FR II quasars and galaxies: quasars are more luminous in the mid-infrared than galaxies because of a combination of Doppler-boosted synchrotron emission in quasars and extinction in galaxies, both orientation-dependent effects.Comment: 42 pages, 14 figures plus two landscape tables. Accepted for publication in Ap

9.7 um Silicate Features in AGNs: New Insights into Unification Models

We describe observations of 9.7 um silicate features in 97 AGNs, exhibiting a wide range of AGN types and of X-ray extinction toward the central nuclei. We find that the strength of the silicate feature correlates with the HI column density estimated from fitting the X-ray data, such that low HI columns correspond to silicate emission while high columns correspond to silicate absorption. The behavior is generally consistent with unification models where the large diversity in AGN properties is caused by viewing-angle-dependent obscuration of the nucleus. Radio-loud AGNs and radio-quiet quasars follow roughly the correlation between HI columns and the strength of the silicate feature defined by Seyfert galaxies. The agreement among AGN types suggests a high-level unification with similar characteristics for the structure of the obscuring material. We demonstrate the implications for unification models qualitatively with a conceptual disk model. The model includes an inner accretion disk (< 0.1 pc in radius), a middle disk (0.1-10 pc in radius) with a dense diffuse component and with embedded denser clouds, and an outer clumpy disk (10-300 pc in radius).Comment: Accepted for publication in ApJ, 14 pages, 5 figures. The on-line table is available at http://cztsy.as.arizona.edu/~yong/silicate_tab1.pd

First results from the Very Small Array -- IV. Cosmological parameter estimation

We investigate the constraints on basic cosmological parameters set by the first compact-configuration observations of the Very Small Array (VSA), and other cosmological data sets, in the standard inflationary LambdaCDM model. Using a weak prior 40 < H_0 < 90 km/s/Mpc and 0 < tau < 0.5 we find that the VSA and COBE_DMR data alone produce the constraints Omega_tot = 1.03^{+0.12}_{-0.12}, Omega_bh^2 = 0.029^{+0.009}_{-0.009}, Omega_cdm h^2 = 0.13^{+0.08}_{-0.05} and n_s = 1.04^{+0.11}_{-0.08} at the 68 per cent confidence level. Adding in the type Ia supernovae constraints, we additionally find Omega_m = 0.32^{+0.09}_{-0.06} and Omega_Lambda = 0.71^{+0.07}_{-0.07}. These constraints are consistent with those found by the BOOMERanG, DASI and MAXIMA experiments. We also find that, by combining all the recent CMB experiments and assuming the HST key project limits for H_0 (for which the X-ray plus Sunyaev--Zel'dovich route gives a similar result), we obtain the tight constraints Omega_m=0.28^{+0.14}_{-0.07} and Omega_Lambda= 0.72^{+0.07}_{-0.13}, which are consistent with, but independent of, those obtained using the supernovae data.Comment: 10 pages, 6 figures, MNRAS in pres

Multifrequency spectral analysis of extragalactic radio sources in the 33-GHz VSA catalogue: sources with flattening and upturn spectrum

We present an analysis of the spectral properties of the extragalactic radio sources in the nearly complete Very Small Array (VSA) sample at 33 GHz. Data from different surveys are used to study source spectra between 1.4 and 33 GHz. We find that, in general, spectra cannot be well described by a single power law in the range of frequencies considered. In particular, most of the VSA sources that are steep between 1.4 and 5 GHz, show a spectral flattening at ν > 5 GHz. We identify 20 objects (19 per cent of the sample) clearly characterized by an upturn spectrum, i.e. a spectrum falling at low frequencies (ν less than or similar to 5 GHz) and inverted at higher frequencies. Spectra with high-frequency flattening or upturn shape are supposed to occur when the emission from the active galactic nucleus (AGN) compact core begins to dominate over the component from extended lobes. This picture fits well with the AGN unified scheme, for objects observed at intermediate viewing angles of the AGN jet. Finally, we discuss implications that this class of sources can have on future cosmic microwave background observations at high resolution

Angular position of nodes in the superconducting gap of YBCO

The thermal conductivity of a YBCO single crystal has been studied as a function of the relative orientation of the crystal axes and a magnetic field rotating in the Cu-O planes. Measurements were carried out at several temperatures below T_c and at a fixed field of 30 kOe. A four-fold symmetry characteristic of a superconducting gap with nodes at odd multiples of 45 degrees in k-space was resolved. Experiments were performed to exclude a possible macroscopic origin for such a four-fold symmetry such as sample shape or anisotropic pinning. Our results impose an upper limit of 10% on the weight of the s-wave component of the essentially d-wave superconducting order parameter of YBCO.Comment: 10 pages, 4 figure