Model reconstructions for the Si(337) orientation

Although unstable, the Si(337) orientation has been known to appear in diverse experimental situations such as the nanoscale faceting of Si(112), or in the case of miscutting a Si(113) surface. Various models for Si(337) have been proposed over time, which motivates a comprehensive study of the structure of this orientation. Such a study is undertaken in this article, where we report the results of a genetic algorithm optimization of the Si(337)-$(2\times 1)$ surface. The algorithm is coupled with a highly optimized empirical potential for silicon, which is used as an efficient way to build a set of possible Si(337) models; these structures are subsequently relaxed at the level of ab initio density functional methods. Using this procedure, we retrieve most of the (337) reconstructions proposed in previous works, as well as a number of novel ones.Comment: 5 figures (low res.); to appear in J. Appl. Phy

Rapid communication: Mapping of the \u3ci\u3eCa\u3csup\u3e2+\u3c/sup\u3e ATPase of fast twitch 1 skeletal muscle sarcoplasmic reticulum (ATP2A1)\u3c/i\u3e gene to porcine chromosome 3

Locus Name. Ca2+ ATPase of fast twitch 1 skeletal muscle sarcoplasmic reticulum. Species. Sus scrofa. Locus Symbol. ATP2A1. Source of Primers. Two sets of PCR primers were designed based on human ATP2A1 sequences (Gen- Bank accession numbers U96773 and U96777) available in the GenBank database. Using pig genomic DNA as a template we used set A primers to amplify approximately 1,100 bp spanning exon 1 to exon 2 and set B primers to amplify 1,200 bp gene segment covering some of exon 8 through part of exon 9. These sequences were deposited in GenBank, accession number AY027797-AY027799

Ground states of a mixture of two species of spin-1 Bose gases with interspecies spin exchange in a magnetic field

We consider a mixture of two species of spin-1 atoms with both interspecies and intraspecies spin exchanges in a weak magnetic field. Under the usual single mode approximation, it can be reduced to a model of coupled giant spins. We find most of its ground states. This is a complicated problem of energy minimization, with three quantum variables under constraints, i.e. the total spin of each species and the total spin of the whole mixture, as well as four parameters, including intraspecies and interspecies spin coupling strengths and the magnetic field. The quantum phase diagram is very rich. Compared with the case without a magnetic field, the ground states are modified by a magnetic field, which also modifies the ground state boundaries or introduces new crossover regimes on the phase diagram. Without interspecies spin coupling, the quantum phase transitions existing in absence of a magnetic field disappear when a magnetic field is applied, which leads to crossover regimes in the phase diagram. Under ferromagnetic interspecies spin coupling, the ground states remain disentangled no matter whether there is a magnetic field. For antiferromagnetic interspecies spin coupling, a magnetic field entangles the ground states in some parameter regimes. When the intraspecies spin couplings are both ferromagnetic, the quantum phase transition between antiferromagnetic and zero interspecies spin couplings survives the magnetic field. When the intraspecies spin couplings are both antiferromagnetic, a magnetic field induces new quantum phase transitions between antiferromagnetic and zero interspecies spin couplings.Comment: 17 pages, initially submitted to Phys. Rev. A on September 15 2010, to appear in Int. J. Mod. Phys.

Understanding single-top-quark production and jets at hadron colliders

I present an analysis of fully differential single-top-quark production plus jets at next-to-leading order. I describe the effects of jet definitions, top-quark mass, and higher orders on the shapes and normalizations of the kinematic distributions, and quantify all theoretical uncertainties. I explain how to interpret next-to-leading-order jet calculations, and compare them to showering event generators. Using the program ZTOP, I show that HERWIG and PYTHIA significantly underestimate both s-channel and t-channel single-top-quark production, and propose a scheme to match the relevant samples to the next-to-leading-order predictions.Comment: 40 pgs., revtex4, 35 ps figs; added Fig. 4, 1 Ref., minor clarifications, to appear in Phys. Rev.

New alleles in calpastatin gene are associated with meat quality traits in pigs

Suggestive QTL affecting raw firmness scores and average Instron force, tenderness, juiciness, and chewiness on cooked meat were mapped to pig chromosome 2 using a three-generation intercross between Berkshire and Yorkshire pigs. Based on its function and location, the calpastatin (CAST) gene was considered to be a good candidate for the observed effects. Several missense and silent mutations were identified in CAST and haplotypes covering most of the coding region were constructed and used for association analyses with meat quality traits. Results demonstrated that one CAST haplotype was significantly associated with lower Instron force and cooking loss and higher juiciness and, therefore, this haplotype is associated with higher eating quality. Some of the sequence variation identified may be associated with differences in phosphorylation of CAST by adenosine cyclic 3′, 5′-monophosphate- dependent protein kinase and may in turn explain the meat quality phenotypic differences. The beneficial haplotype was present in all the commercial breeds tested and may provide significant improvements for the pig industry and consumers because it can be used in marker-assisted selection to produce naturally tender and juicy pork without additional processing steps

Elastic constants of beta-eucryptite: A density functional theory study

The five independent elastic constants of hexagonal $\beta$-eucryptite have been determined using density functional theory (DFT) total energy calculations. The calculated values agree well, to within 15%, with the experimental data. Using the calculated elastic constants, the linear compressibility of $\beta$-eucryptite parallel to the c-axis, $\chi_c$, and perpendicular to it, $\chi_a$, have been evaluated. These values are in close agreement to those obtained from experimentally known elastic constants, but are in contradiction to the direct measurements based on a three-terminal technique. The calculated compressibility parallel to the c-axis was found to positive as opposed to the negative value obtained by direct measurements. We have demonstrated that $\chi_c$ must be positive and discussed the implications of a positive $\chi_c$ in the context of explaining the negative bulk thermal expansion of $\beta$-eucryptite.Comment: 3 eps figures, submitted for publicatio