Application of Low-Cost UASs and Digital Photogrammetry for High-Resolution Snow Depth Mapping in the Arctic

The repeat acquisition of high-resolution snow depth measurements has important research and civil applications in the Arctic. Currently the surveying methods for capturing the high spatial and temporal variability of the snowpack are expensive, in particular for small areal extents. An alternative methodology based on Unmanned Aerial Systems (UASs) and digital photogrammetry was tested over varying surveying conditions in the Arctic employing two diverse and low-cost UAS-camera combinations (500 and 1700 USD, respectively). Six areas, two in Svalbard and four in Greenland, were mapped covering from 1386 to 38,410 m2. The sites presented diverse snow surface types, underlying topography and light conditions in order to test the method under potentially limiting conditions. The resulting snow depth maps achieved spatial resolutions between 0.06 and 0.09 m. The average difference between UAS-estimated and measured snow depth, checked with conventional snow probing, ranged from 0.015 to 0.16 m. The impact of image pre-processing was explored, improving point cloud density and accuracy for different image qualities and snow/light conditions. Our UAS photogrammetry results are expected to be scalable to larger areal extents. While further validation is needed, with the inclusion of extra validation points, the study showcases the potential of this cost-effective methodology for high-resolution monitoring of snow dynamics in the Arctic and beyond

Spatial variability in sea-ice algal biomass: an under-ice remote sensing perspective

Sea-ice algae are a paramount feature of polar marine ecosystems and ice algal standing stocks are characterized by a high spatio-temporal variability. Traditional sampling techniques, e.g., ice coring, are labor intensive, spatially limited and invasive, thereby limiting our understanding of ice algal biomass variability patterns. This has consequences for quantifying ice-associated algal biomass distribution, primary production, and detecting responses to changing environmental conditions. Close-range under-ice optical remote sensing techniques have emerged as a capable alternative providing non-invasive estimates of ice algal biomass and its spatial variability. In this review we first summarize observational studies, using both classical and new methods that aim to capture biomass variability at multiple spatial scales and identify the environmental drivers. We introduce the complex multi-disciplinary nature of under-ice spectral radiation profiling techniques and discuss relevant concepts of sea-ice radiative transfer and bio-optics. In addition, we tabulate and discuss advances and limitations of different statistical approaches used to correlate biomass and under-ice light spectral composition. We also explore theoretical and technical aspects of using Unmanned Underwater Vehicles (UUV), and Hyperspectral Imaging (HI) technology in an under-ice remote sensing context. The review concludes with an outlook and way forward to combine platforms and optical sensors to quantify ice algal spatial variability and establish relationships with its environmental drivers

Mapping water content in drying Antarctic moss communities using UAS-borne SWIR imaging spectroscopy

Antarctic moss beds are sensitive to climatic conditions, and both their survival and community composition are particularly influenced by the availability of liquid water over summer. As Antarctic regions increasingly face climate pressures (e.g., changing hydrology and heat waves), advancing capabilities to efficiently and non-destructively monitor water content in moss communities becomes a key research priority. Because of the complexity induced by multiple micro-climatic drivers and its fragility, tracking the evolution and responses of moss bed moisture requires monitoring methods that are non-intrusive, efficient, and spatially significant, such as the use of unoccupied aerial systems (UAS). In this study, we combine a multi-species drying laboratory experiment with short-wave infrared (SWIR) spectroscopy analyses to first develop a Random Forest regression Model (RFM) capable of predicting Antarctic moss turf water content (~5% error). The RFM was then applied to UAS-borne SWIR imaging data (900–1700 nm, resolution) of the moss beds at high spatial resolution (2 cm) across three sites in the vicinity of Casey Station, Antarctica. The sites differed in terrain, snow cover, and moisture availability to evaluate method capabilities under different conditions. Optimum RFM parameters and input variables (spectral indices and reflectance spectra) were determined. Maps of moss moisture were validated via acquiring moss spectra and water content (using sponges inserted into the moss turf) collected in situ, for which an exponential correlation (R2 = 0.72) was reported. RFM further allowed investigation of the influential spectral variables to model water content in moss and associated spectral water absorption features. We demonstrated that UAS-borne SWIR imaging is a promising new tool to map and quantify water content in Antarctic moss beds. Hyperspectral mapping facilitates the exploration of the spatial variability of moss health and enables the creation of a baseline against which changes in these moss communities can be measured

Life beneath the ice: jellyfish and ctenophores from the Ross Sea, Antarctica, with an image-based training set for machine learning

Southern Ocean ecosystems are currently experiencing increased environmental changes and anthropogenic pressures, urging scientists to report on their biodiversity and biogeography. One major marine taxonomically diverse and trophically important group that has, however, stayed largely understudied until now is the gelatinous zooplankton, including cnidarians, ctenophores and tunicates. This data scarcity is predominantly due to many of these fragile, soft-bodied organisms being easily fragmented and/or destroyed with traditional net sampling methods. Progress in alternative survey methods including, for instance, optics-based methods is slowly starting to overcome these obstacles. As video annotation by human observers is both time-consuming and financially costly, machine learning techniques should be developed for the analysis of in-situ image-based datasets. This requires taxonomically accurate training sets for correct species identification and the present paper is the first to provide such data.In this study, we twice conducted three week-long in situ optics-based surveys of gelatinous zooplankton found under the ice in the McMurdo Sound, Antarctica. Our study constitutes the first optics-based survey of gelatinous zooplankton in the Ross Sea and the first study to use in situ observations to describe taxonomic, trophic, and behavioral characteristics of gelatinous zooplankton from the Southern Ocean. Despite the small geographic and temporal scales of our study, we provided new undescribed morphological traits for all observed gelatinous zooplankton species (eight cnidarian and four ctenophore species). Three ctenophores and one leptomedusa likely represent undescribed species. Furthermore, along with the photography and videography, we prepared a Common Objects in Context (COCO) dataset, so that this study is the first to provide a taxonomist-ratified image training set for future machine learning algorithm development concerning Southern Ocean gelatinous zooplankton species

Life beneath the ice: jellyfish and ctenophores from the Ross Sea, Antarctica, with an image-based training set for machine learning

Southern Ocean ecosystems are currently experiencing increased environmental changes and anthropogenic pressures, urging scientists to report on their biodiversity and biogeography. One major marine taxonomically diverse and trophically important group that has, however, stayed largely understudied until now is the gelatinous zooplankton, including cnidarians, ctenophores and tunicates. This data scarcity is predominantly due to many of these fragile, soft-bodied organisms being easily fragmented and/or destroyed with traditional net sampling methods. Progress in alternative survey methods including, for instance, optics-based methods is slowly starting to overcome these obstacles. As video annotation by human observers is both time-consuming and financially costly, machine learning techniques should be developed for the analysis of in-situ image-based datasets. This requires taxonomically accurate training sets for correct species identification and the present paper is the first to provide such data.In this study, we twice conducted three week-long in situ optics-based surveys of gelatinous zooplankton found under the ice in the McMurdo Sound, Antarctica. Our study constitutes the first optics-based survey of gelatinous zooplankton in the Ross Sea and the first study to use in situ observations to describe taxonomic, trophic, and behavioral characteristics of gelatinous zooplankton from the Southern Ocean. Despite the small geographic and temporal scales of our study, we provided new undescribed morphological traits for all observed gelatinous zooplankton species (eight cnidarian and four ctenophore species). Three ctenophores and one leptomedusa likely represent undescribed species. Furthermore, along with the photography and videography, we prepared a Common Objects in Context (COCO) dataset, so that this study is the first to provide a taxonomist-ratified image training set for future machine learning algorithm development concerning Southern Ocean gelatinous zooplankton species

Quantifying pigment content in crustose coralline algae using hyperspectral imaging: A case study with <i>Tethysphytum antarcticum</i> (Ross Sea, Antarctica)

Crustose coralline algae (CCA) are a highly diverse group of habitat-forming, calcifying red macroalgae (Rhodophyta) with unique adaptations to diverse irradiance regimes. A distinctive CCA phenotype adaptation, which allows them to maximize photosynthetic performance in low light, is their content of a specific group of light-harvesting pigments called phycobilins. In this study, we assessed the potential of noninvasive hyperspectral imaging (HSI) in the visible spectrum (400-800 nm) to describe the phenotypic variability in phycobilin content of an Antarctic coralline, Tethysphytum antarcticum (Hapalidiales), from two distinct locations. We validated our measurements with pigment extractions and spectrophotometry analysis, in addition to DNA barcoding using the psbA marker. Targeted spectral indices were developed and correlated with phycobilin content using linear mixed models (R2 = 0.64-0.7). Once applied to the HSI, the models revealed the distinct phycoerythrin spatial distribution in the two site-specific CCA phenotypes, with thin and thick crusts, respectively. This study advances the capabilities of hyperspectral imaging as a tool to quantitatively study CCA pigmentation in relation to their phenotypic plasticity, which can be applied in laboratory studies and potentially in situ surveys using underwater hyperspectral imaging systems