Vibrational energy relaxation in proteins

An overview of theories related to vibrational energy relaxation (VER) in proteins is presented. VER of a selected mode in cytochrome c is studied using two theoretical approaches. One is the equilibrium simulation approach with quantum correction factors, and the other is the reduced model approach which describes the protein as an ensemble of normal modes interacting through nonlinear coupling elements. Both methods result in estimates of the VER time (sub ps) for a CD stretching mode in the protein at room temperature. The theoretical predictions are in accord with the experimental data of Romesberg's group. A perspective on future directions for the detailed study of time scales and mechanisms for VER in proteins is presented.Comment: 12 pages, 4 figures, accepted for publication in PNA

Controlled Synthesis of Manganese Dioxide Nanostructures via a Facile Hydrothermal Route

Manganese dioxide nanostructures with controllable morphological structures and crystalline phases were synthesized via a facile hydrothermal route at low temperatures without using any templates or surfactants. Both the aging duration and aging temperatures were the main synthesis parameters used to influence and control the rate of morphological and structural evolution of MnO2 nanostructures. MnO2 nanostructures comprise of spherical nanoparticulate agglomerates and highly amorphous in nature were formed at lower temperature and/or short aging duration. In contrast, MnO2 nanostructures of sea-urchin-like and nanorods-like morphologies and nanocrystalline in nature were prepared at the combined higher aging temperatures and longer aging durations. These nanostructures underwent notable phase transformation from δ-MnO2 to α-MnO2 upon prolonged hydrothermal aging duration and exhibited accelerated rate of phase transformation at higher aging temperature

Sox10+ adult stem cells contribute to biomaterial encapsulation and microvascularization.

Implanted biomaterials and biomedical devices generally induce foreign body reaction and end up with encapsulation by a dense avascular fibrous layer enriched in extracellular matrix. Fibroblasts/myofibroblasts are thought to be the major cell type involved in encapsulation, but it is unclear whether and how stem cells contribute to this process. Here we show, for the first time, that Sox10+ adult stem cells contribute to both encapsulation and microvessel formation. Sox10+ adult stem cells were found sparsely in the stroma of subcutaneous loose connective tissues. Upon subcutaneous biomaterial implantation, Sox10+ stem cells were activated and recruited to the biomaterial scaffold, and differentiated into fibroblasts and then myofibroblasts. This differentiation process from Sox10+ stem cells to myofibroblasts could be recapitulated in vitro. On the other hand, Sox10+ stem cells could differentiate into perivascular cells to stabilize newly formed microvessels. Sox10+ stem cells and endothelial cells in three-dimensional co-culture self-assembled into microvessels, and platelet-derived growth factor had chemotactic effect on Sox10+ stem cells. Transplanted Sox10+ stem cells differentiated into smooth muscle cells to stabilize functional microvessels. These findings demonstrate the critical role of adult stem cells in tissue remodeling and unravel the complexity of stem cell fate determination

Distributed Semi-supervised Fuzzy Regression with Interpolation Consistency Regularization

Recently, distributed semi-supervised learning (DSSL) algorithms have shown their effectiveness in leveraging unlabeled samples over interconnected networks, where agents cannot share their original data with each other and can only communicate non-sensitive information with their neighbors. However, existing DSSL algorithms cannot cope with data uncertainties and may suffer from high computation and communication overhead problems. To handle these issues, we propose a distributed semi-supervised fuzzy regression (DSFR) model with fuzzy if-then rules and interpolation consistency regularization (ICR). The ICR, which was proposed recently for semi-supervised problem, can force decision boundaries to pass through sparse data areas, thus increasing model robustness. However, its application in distributed scenarios has not been considered yet. In this work, we proposed a distributed Fuzzy C-means (DFCM) method and a distributed interpolation consistency regularization (DICR) built on the well-known alternating direction method of multipliers to respectively locate parameters in antecedent and consequent components of DSFR. Notably, the DSFR model converges very fast since it does not involve back-propagation procedure and is scalable to large-scale datasets benefiting from the utilization of DFCM and DICR. Experiments results on both artificial and real-world datasets show that the proposed DSFR model can achieve much better performance than the state-of-the-art DSSL algorithm in terms of both loss value and computational cost

Association between interleukin-6 receptor gene variations and atherosclerotic lipid profiles among young adolescents in Taiwan

<p>Abstract</p> <p>Background</p> <p>To analyze the potential genetic associations between four polymorphisms of interleukin-6 receptor (IL-6R) gene and atherosclerotic lipid profiles among young adolescents in Taiwan.</p> <p>Methods</p> <p>Using data from the Taipei Children Heart Study-II - a cross-sectional survey in 2003. After multi-stage sampling, we selected 418 boys and 441 girls with an average age of 13.1 years. We genotyped the subjects for four IL-6R gene polymorphisms (rs4845617 G/A, rs4845623 A/G, rs8192284 A/C, and rs2229238 C/T) using a TaqMan 5' nuclease assay. Lipid profiles, including total cholesterol (CHOL), triglycerides (TG), high density lipoprotein-cholesterol (HDL-C), low density lipoprotein-cholesterol (LDL-C) were measured using standard methods. We also calculated CHOL/HDL-C ratio, LDL-C/HDL-C ratio, and TG/HDL-C ratio as atherosclerotic indexes.</p> <p>Results</p> <p>IL-6R rs8192284 A/C and rs2229238 C/T variants showed strong associations with high TG (additive model, OR = 1.58, 95%CI: 1.05-2.37; OR = 1.55, 95%CI: 1.04-2.29, respectively), low HDL-C (additive model, OR = 1.57, 95%CI: 1.03-2.39; OR = 1.68, 95%CI: 1.12-2.52, respectively), and high CHOL/HDL-C (additive model, OR = 1.68, 95%CI: 1.08-2.61, OR = 1.82, 95%CI: 1.18-2.79, respectively) in girls. We inferred five common haplotypes using rs4845617 G/A, rs4845623 A/G, and rs2229238 C/T (GAC, GAT, GGC, AAC, and AAT). In girls, the AAT haplotype was associated with a significant risk of high TG, low HDL-C, high CHOL/HDL-C, and abnormal lipid levels (high TG or low HDL-C) when compared with the GAC haplotype (OR range = 3.08-4.40, all p < 0.05).</p> <p>Conclusion</p> <p>The IL-6R rs8192284 A/C and rs2229238 C/T variants are associated with dyslipidemia in girls, but not in boys. The AAT haplotype of the IL-6R gene (rs4845617 G/A, rs4845623 A/G, and rs2229238 C/T) may play an important role in the pathogenesis of dyslipidemia and atherosclerosis in girls.</p

Acute effects of kinesiology tape tension on soleus muscle h-reflex modulations during lying and standing postures

Copyright: © 2020 Chen et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Kinesiology tape (KT) has been widely used in the areas of sports and rehabilitation. However, there is no gold standard for the tape tension used during a KT application. The purpose of this study was to examine the effects of KT application with different tension intensities on soleus muscle Hoffmann-reflex (H-reflex) modulation during lying and standing postures. Fifteen healthy university students were tested with 3 tape tension intensities during separate visits with a randomized sequence: tape-on no tension (0KT), moderate (about 50% of the maximal tape tension: (ModKT), and maximal tape tension (MaxKT). During each experimental visit, the H-reflex measurements on the soleus muscle were taken before, during, and after the KT application for both lying and standing postures. The H-wave and M-wave recruitment curves were generated using surface electromyography (EMG). There was a main effect for posture (p = 0.001) for the maximal peak-to-peak amplitude of the H-wave and M-wave (Hmax/Mmax) ratio, showing the depressed Hmax/Mmax ratio during standing, when compared to the lying posture. Even though the tension factor had a large effect (ηp2 = 0.165), different tape tensions showed no significant differential effects for the Hmax/Mmax ratio. The spinal motoneuron excitability was not altered, even during the maximal tension KT application on the soleus muscle. Thus, the tension used during a KT application should not be a concern in terms of modulating the sensorimotor activity ascribed to elastic taping during lying and standing postures