4,103 research outputs found
Support for adaptivity in ARMCI using migratable objects
Many new paradigms of parallel programming have emerged that compete with and complement the standard and well-established MPI model. Most notable, and suc-cessful, among these are models that support some form of global address space. At the same time, approaches based on migratable objects (also called virtualized processes) have shown that resource management concerns can be sep-arated effectively from the overall parallel programming ef-fort. For example, Charm++ supports dynamic load bal-ancing via an intelligent adaptive run-time system. It is also becoming clear that a multi-paradigm approach that allows modules written in one or more paradigms to coexist and co-operate will be necessary to tame the parallel pro-gramming challenge. ARMCI is a remote memory copy library that serves as a foundation of many global address space languages and libraries. This paper presents our preliminary work on inte-grating and supporting ARMCI with the adaptive run-time system of Charm++ as a part of our overall effort in the multi-paradigm approach.
Decreased Innate Migration of Pro-Inflammatory M1 Macrophages through the Mesothelial Membrane Is Affected by Ceramide Kinase and Ceramide 1-P
The retrograde flow of endometrial tissues deposited into the peritoneal cavity occurs in women during menstruation. Classically (M1) or alternatively (M2) activated macrophages partake in the removal of regurgitated menstrual tissue. The failure of macrophage egress from the peritoneal cavity through the mesothelium leads to chronic inflammation in endometriosis. To study the migration differences of macrophage phenotypes across mesothelial cells, an in vitro model of macrophage egress across a peritoneal mesothelial cell monolayer membrane was developed. M1 macrophages were more sessile, emigrating 2.9-fold less than M2 macrophages. The M1 macrophages displayed a pro-inflammatory cytokine signature, including IL-1α, IL-1β, TNF-α, TNF-β, and IL-12p70. Mass spectrometry sphingolipidomics revealed decreased levels of ceramide-1-phosphate (C1P), an inducer of migration in M1 macrophages, which correlated with its poor migration behavior. C1P is generated by ceramide kinase (CERK) from ceramide, and blocking C1P synthesis via the action of NVP231, a specific CERK chemical inhibitor, prohibited the emigration of M1 and M2 macrophages up to 6.7-fold. Incubation with exogenously added C1P rescued this effect. These results suggest that M1 macrophages are less mobile and have higher retention in the peritoneum due to lower C1P levels, which contributes to an altered peritoneal environment in endometriosis by generating a predominant pro-inflammatory cytokine environment
Magnetic field generation in finite beam plasma system
For finite systems boundaries can introduce remarkable novel features. A well
known example is the Casimir effect [1, 2] that is observed in quantum
electrodynamic systems. In classical systems too novel effects associated with
finite boundaries have been observed, for example the surface plasmon mode [3]
that appears when the plasma has a finite extension. In this work a novel
instability associated with the finite transverse size of a beam owing through
a plasma system has been shown to exist. This instability leads to distinct
characteristic features of the associated magnetic field that gets generated.
For example, in contrast to the well known unstable Weibel mode of a beam
plasma system which generates magnetic field at the skin depth scale, this
instability generates magnetic field at the scales length of the transverse
beam dimension [4]. The existence of this new instability is demonstrated by
analytical arguments and by simulations conducted with the help of a variety of
Particle - In - Cell (PIC) codes (e.g. OSIRIS, EPOCH, PICPSI). Two fluid
simulations have also been conducted which confirm the observations.
Furthermore, laboratory experiments on laser plasma system also provides
evidence of such an instability mechanism at work
Performance Limits of Stochastic Sub-Gradient Learning, Part II: Multi-Agent Case
The analysis in Part I revealed interesting properties for subgradient
learning algorithms in the context of stochastic optimization when gradient
noise is present. These algorithms are used when the risk functions are
non-smooth and involve non-differentiable components. They have been long
recognized as being slow converging methods. However, it was revealed in Part I
that the rate of convergence becomes linear for stochastic optimization
problems, with the error iterate converging at an exponential rate
to within an neighborhood of the optimizer, for some and small step-size . The conclusion was established under weaker
assumptions than the prior literature and, moreover, several important problems
(such as LASSO, SVM, and Total Variation) were shown to satisfy these weaker
assumptions automatically (but not the previously used conditions from the
literature). These results revealed that sub-gradient learning methods have
more favorable behavior than originally thought when used to enable continuous
adaptation and learning. The results of Part I were exclusive to single-agent
adaptation. The purpose of the current Part II is to examine the implications
of these discoveries when a collection of networked agents employs subgradient
learning as their cooperative mechanism. The analysis will show that, despite
the coupled dynamics that arises in a networked scenario, the agents are still
able to attain linear convergence in the stochastic case; they are also able to
reach agreement within of the optimizer
Solar wind collisional heating
To properly describe heating in weakly collisional turbulent plasmas such as
the solar wind, inter-particle collisions should be taken into account.
Collisions can convert ordered energy into heat by means of irreversible
relaxation towards the thermal equilibrium. Recently, Pezzi et al. (Phys. Rev.
Lett., vol. 116, 2016, p. 145001) showed that the plasma collisionality is
enhanced by the presence of fine structures in velocity space. Here, the
analysis is extended by directly comparing the effects of the fully nonlinear
Landau operator and a linearized Landau operator. By focusing on the relaxation
towards the equilibrium of an out of equilibrium distribution function in a
homogeneous force-free plasma, here it is pointed out that it is significant to
retain nonlinearities in the collisional operator to quantify the importance of
collisional effects. Although the presence of several characteristic times
associated with the dissipation of different phase space structures is
recovered in both the cases of the nonlinear and the linearized operators, the
influence of these times is different in the two cases. In the linearized
operator case, the recovered characteristic times are systematically larger
than in the fully nonlinear operator case, this suggesting that fine velocity
structures are dissipated slower if nonlinearities are neglected in the
collisional operator
Locus model for space-time fabric and quantum indeterminacies
A simple locus model for the space-time fabric is presented and is compared
with quantum foam and random walk models. The induced indeterminacies in
momentum are calculated and it is shown that these space-time fabric
indeterminacies are, in most cases, negligible compared with the quantum
mechanical indeterminacies. This result restricts the possibilities of an
experimental observation of the space-time fabric
Some Remarks about the Complexity of Epidemics Management
Recent outbreaks of Ebola, H1N1 and other infectious diseases have shown that
the assumptions underlying the established theory of epidemics management are
too idealistic. For an improvement of procedures and organizations involved in
fighting epidemics, extended models of epidemics management are required. The
necessary extensions consist in a representation of the management loop and the
potential frictions influencing the loop. The effects of the non-deterministic
frictions can be taken into account by including the measures of robustness and
risk in the assessment of management options. Thus, besides of the increased
structural complexity resulting from the model extensions, the computational
complexity of the task of epidemics management - interpreted as an optimization
problem - is increased as well. This is a serious obstacle for analyzing the
model and may require an additional pre-processing enabling a simplification of
the analysis process. The paper closes with an outlook discussing some
forthcoming problems
Ferromagnetic and insulating behavior of LaCoO3 films grown on a (001) SrTiO3 substrate. A simple ionic picture explained ab initio
This paper shows that the oxygen vacancies observed experimentally in thin
films of LaCoO3 subject to tensile strain are thermodynamically stable
according to ab initio calculations. By using DFT calculations, we show that
oxygen vacancies on the order of 6 % forming chains perpendicular to the (001)
direction are more stable than the stoichiometric solution. These lead to
magnetic Co2+ ions surrounding the vacancies that couple ferromagnetically. The
remaining Co3+ cations in an octahedral environment are non magnetic. The gap
leading to a ferromagnetic insulating phase occurs naturally and we provide a
simple ionic picture to explain the resulting electronic structure.Comment: 7 pages, 7 figure
Wave-like Decoding of Tail-biting Spatially Coupled LDPC Codes Through Iterative Demapping
For finite coupling lengths, terminated spatially coupled low-density
parity-check (SC-LDPC) codes show a non-negligible rate-loss. In this paper, we
investigate if this rate loss can be mitigated by tail-biting SC-LDPC codes in
conjunction with iterative demapping of higher order modulation formats.
Therefore, we examine the BP threshold of different coupled and uncoupled
ensembles. A comparison between the decoding thresholds approximated by EXIT
charts and the density evolution results of the coupled and uncoupled ensemble
is given. We investigate the effect and potential of different labelings for
such a set-up using per-bit EXIT curves, and exemplify the method for a 16-QAM
system, e.g., using set partitioning labelings. A hybrid mapping is proposed,
where different sub-blocks use different labelings in order to further optimize
the decoding thresholds of tail-biting codes, while the computational
complexity overhead through iterative demapping remains small.Comment: presentat at the International Symposium on Turbo Codes & Iterative
Information Processing (ISTC), Brest, Sept. 201
Part of Speech Based Term Weighting for Information Retrieval
Automatic language processing tools typically assign to terms so-called
weights corresponding to the contribution of terms to information content.
Traditionally, term weights are computed from lexical statistics, e.g., term
frequencies. We propose a new type of term weight that is computed from part of
speech (POS) n-gram statistics. The proposed POS-based term weight represents
how informative a term is in general, based on the POS contexts in which it
generally occurs in language. We suggest five different computations of
POS-based term weights by extending existing statistical approximations of term
information measures. We apply these POS-based term weights to information
retrieval, by integrating them into the model that matches documents to
queries. Experiments with two TREC collections and 300 queries, using TF-IDF &
BM25 as baselines, show that integrating our POS-based term weights to
retrieval always leads to gains (up to +33.7% from the baseline). Additional
experiments with a different retrieval model as baseline (Language Model with
Dirichlet priors smoothing) and our best performing POS-based term weight, show
retrieval gains always and consistently across the whole smoothing range of the
baseline
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