Differential occupation of available coral hosts by coral-dwelling damselfish (Pomacentridae) on Australia's Great Barrier Reef

Associations between habitat-forming, branching scleractinian corals and damselfish have critical implications for the function and trophic dynamics of coral reef ecosystems. This study quantifies how different characteristics of reef habitat, and of coral morphology, determine whether fish occupy a coral colony. In situ surveys of aggregative damselfish-coral associations were conducted at 51 different sites distributed among 22 reefs spread along > 1700 km of the Great Barrier Reef, to quantify interaction frequency over a large spatial scale. The prevalence of fish-coral associations between five damselfish (Chromis viridis, Dascyllus aruanus, Dascyllus reticulatus, Pomacentrus amboinensis and Pomacentrus moluccensis) and five coral species (Acropora spathulata, Acropora intermedia, Pocillopora damicornis, Seriatopora hystrix, and Stylophora pistillata) averaged ~30% across all corals, but ranged from < 1% to 93% of small branching corals occupied at each site, depending on reef exposure levels and habitat. Surprisingly, coral cover was not correlated with coral occupancy, or total biomass of damselfish. Instead, the biomass of damselfish was two-fold greater on sheltered sites compared with exposed sites. Reef habitat type strongly governed these interactions with reef slope/base (25%) and shallow sand-patch habitats (38%) hosting a majority of aggregative damselfish-branching coral associations compared to reef flat (10%), crest (16%), and wall habitats (11%). Among the focal coral species, Seriatopora hystrix hosted the highest damselfish biomass (12.45 g per occupied colony) and Acropora intermedia the least (6.87 g per occupied colony). Analyses of local coral colony traits indicated that multiple factors governed colony usage, including spacing between colonies on the benthos, colony position, and colony branching patterns. Nevertheless, the morphological and habitat characteristics that determine whether or not a colony is occupied by fish varied among coral species. These findings illuminate the realized niche of one of the most important and abundant reef fish families and provide a context for understanding how fish-coral interactions influence coral population and community level processes

Environmental drivers of variation in bleaching severity of Acropora species during an extreme thermal anomaly

High sea surface temperatures caused global coral bleaching during 2015–2016. During this thermal stress event, we quantified within- and among-species variability in bleaching severity for critical habitat-forming Acropora corals. The objective of this study was to understand the drivers of spatial and species-specific variation in the bleaching susceptibility of these corals, and to evaluate whether bleaching susceptibility under extreme thermal stress was consistent with that observed during less severe bleaching events. We surveyed and mapped Acropora corals at 10 sites (N = 596) around the Lizard Island group on the northern Great Barrier Reef. For each colony, bleaching severity was quantified using a new image analysis technique, and we assessed whether small-scale environmental variables (depth, microhabitat, competition intensity) and species traits (colony morphology, colony size, known symbiont clade association) explained variation in bleaching. Results showed that during severe thermal stress, bleaching of branching corals was linked to microhabitat features, and was more severe at reef edge compared with lagoonal sites. Bleaching severity worsened over a very short time-frame (∼1 week), but did not differ systematically with water depth, competition intensity, or colony size. At our study location, within- and among-species variation in bleaching severity was relatively low compared to the level of variation reported in the literature. More broadly, our results indicate that variability in bleaching susceptibility during extreme thermal stress is not consistent with that observed during previous bleaching events that have ranged in severity among globally dispersed sites, with fewer species escaping bleaching during severe thermal stress. In addition, shaded microhabitats can provide a refuge from bleaching which provides further evidence of the importance of topographic complexity for maintaining the biodiversity and ecosystem functioning of coral reefs

BioTIME: A database of biodiversity time series for the Anthropocene.

MotivationThe BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene.Main types of variables includedThe database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record.Spatial location and grainBioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1,000,000,000,000 cm2).Time period and grainBioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year.Major taxa and level of measurementBioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates.Software format.csv and .SQL

Reconstructing the basal angiosperm phylogeny: evaluating information content of mitochondrial genes

Three mitochondrial (atp1, matR, nad5), four chloroplast (atpB, matK, rbcL, rpoC2), and one nuclear (18S) genes from 162 seed plants, representing all major lineages of gymnosperms and angiosperms, were analyzed together in a supermatrix or in various partitions using likelihood and parsimony methods. The results show that Amborella + Nymphaeales together constitute the first diverging lineage of angiosperms, and that the topology of Amborella alone being sister to all other angiosperms likely represents a local long branch attraction artifact. The monophyly of magnoliids, as well as sister relationships between Magnoliales and Laurales, and between Canellales and Piperales, are all strongly supported. The sister relationship to eudicots of Ceratophyllum is not strongly supported by this study; instead a placement of the genus with Chloranthaceae receives moderate support in the mitochondrial gene analyses. Relationships among magnoliids, monocots, and eudicots remain unresolved. Direct comparisons of analytic results from several data partitions with or without RNA editing sites show that in multigene analyses, RNA editing has no effect on well supported relationships, but minor effect on weakly supported ones. Finally, comparisons of results from separate analyses of mitochondrial and chloroplast genes demonstrate that mitochondrial genes, with overall slower rates of substitution than chloroplast genes, are informative phylogenetic markers, and are particularly suitable for resolving deep relationships.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/147147/1/tax25065680.pd

Differential Occupation of Available Coral Hosts by Coral-Dwelling Damselfish (Pomacentridae) on Australia’s Great Barrier Reef

Associations between habitat-forming, branching scleractinian corals and damselfish have critical implications for the function and trophic dynamics of coral reef ecosystems. This study quantifies how different characteristics of reef habitat, and of coral morphology, determine whether fish occupy a coral colony. In situ surveys of aggregative damselfish&ndash;coral associations were conducted at 51 different sites distributed among 22 reefs spread along &gt;1700 km of the Great Barrier Reef, to quantify interaction frequency over a large spatial scale. The prevalence of fish&ndash;coral associations between five damselfish (Chromis viridis, Dascyllus aruanus, Dascyllus reticulatus, Pomacentrus amboinensis and Pomacentrus moluccensis) and five coral species (Acropora spathulata, Acropora intermedia, Pocillopora damicornis, Seriatopora hystrix, and Stylophora pistillata) averaged ~30% across all corals, but ranged from &lt;1% to 93% of small branching corals occupied at each site, depending on reef exposure levels and habitat. Surprisingly, coral cover was not correlated with coral occupancy, or total biomass of damselfish. Instead, the biomass of damselfish was two-fold greater on sheltered sites compared with exposed sites. Reef habitat type strongly governed these interactions with reef slope/base (25%) and shallow sand-patch habitats (38%) hosting a majority of aggregative damselfish-branching coral associations compared to reef flat (10%), crest (16%), and wall habitats (11%). Among the focal coral species, Seriatopora hystrix hosted the highest damselfish biomass (12.45 g per occupied colony) and Acropora intermedia the least (6.87 g per occupied colony). Analyses of local coral colony traits indicated that multiple factors governed colony usage, including spacing between colonies on the benthos, colony position, and colony branching patterns. Nevertheless, the morphological and habitat characteristics that determine whether or not a colony is occupied by fish varied among coral species. These findings illuminate the realized niche of one of the most important and abundant reef fish families and provide a context for understanding how fish&ndash;coral interactions influence coral population and community level processes

Neighbor diversity regulates the productivity of coral assemblages

Sustaining ecological functions as biodiversity changes will be a major challenge in the 21st century [1]. However, our understanding of the relationship between biodiversity and ecosystem function is still emerging on tropical coral reefs [2], where reef-building corals form highly productive assemblages [3, 4] and species respond in different ways to their neighbors [5] and their environment (e.g., water flow) [6]. Experimental coral communities were assembled to quantify the performance of coral colonies with and without neighbors and in the presence of conspecifics versus heterospecifics. Under higher flow, we identified a positive effect of coral species richness on primary productivity (gross and net photosynthesis) indicated by a 53% increase in productivity in multispecies assemblages (2-4 species) relative to monocultures. Productivity in monocultures was predicted by surface areas associated with different species morphologies. In contrast, multispecies assemblages maintained high levels of productivity even in the absence of the most productive species, reflecting non-additive effects of species richness on community functioning. Assemblage performances were regulated by positive and negative interactions between colonies, with many colonies performing better among heterospecific neighbors than in isolation (facilitation). Facilitation occurred primarily among flow-sensitive taxa with simple morphologies and did not occur under lower flow, suggesting that modifications to flow microclimates by corals generated beneficial, interspecific interactions. Our results show that competition and facilitation among neighbors may be important mechanisms regulating coral assemblage productivity in variable environments. Furthermore, shifts in the diversity and identity of neighbors can impair these interactions, with potentially widespread consequences for coral community functioning

Diurnal foraging of a wild coral-reef fish Parapercis australis in relation to late-summer temperatures

In situ observations of diurnal foraging behaviour of a common site-attached shallow reef mesopredator Parapercis australis during late summer, revealed that although diet composition was unaffected by seawater temperature (range 28.3-32.4 degrees C), feeding strikes and distance moved increased with temperature up to 30.5 degrees C, beyond which they sharply declined, indicative of currently living beyond their thermal optimum. Diel feeding strikes and distance moved were however, tightly linked to ambient temperature as it related to the population's apparent thermal optimum, peaking at times when it was approached (1230 and 1700 h) and declining up to four fold at times deviating from this. These findings suggest that although this population may be currently living beyond its thermal optimum, it copes by down regulating energetically costly foraging movement and consumption and under future oceanic temperatures, these behavioural modifications are probably insufficient to avoid deleterious effects on population viability without the aid of long-term acclimation or adaptation

Farming damselfishes shape algal turf sediment dynamics on coral reefs

Farming damselfishes are well known for shaping benthic communities on reefs, in terms of both cultivating algae and increasing productivity. However, their capacity to shape relationships between algal turfs, detritus and sediments remains largely unknown, despite the importance of such relationships on reefs. We therefore examined the relationships between sediment loads and both algal turf length and detritus levels, inside and outside farming damselfish territories, at two reefs on the Great Barrier Reef. We found that, while sediment loads are tightly coupled with algal turfs outside territories, the nature of this coupling was fundamentally different inside damselfish territories, with significantly longer algal turfs and higher detritus levels prevailing, irrespective of sediment loads. These modified algal turf-sediment relationships may be a key factor in explaining, a) the significantly higher productivity levels reported from within farming damselfish territories and b) the ability of farming damselfishes to persist in high-sediment locations

Occurrence and accumulation of heavy metals in algal turf particulates and sediments on coral reefs

Algal turfs form a critical interface on coral reefs that interacts with several key ecosystem processes. While we know these turfs have a remarkable propensity to accumulate sediments, which can have a range of ecosystem impacts, their role as sinks for heavy metals remains largely unexamined. Here we quantified the concentration of 15 metals in algal turf sediments from Lizard Island and Orpheus Island on the Great Barrier Reef, and specifically explored how the loads of arsenic, cobalt, iron and lead were related to turf length. Metal composition differed markedly between the two islands, with the composition at Orpheus Island suggesting closer links to terrestrial sediment sources. Furthermore, metal loads increased significantly with turf length, suggesting that longer turfs can accumulate these pollutants on reefs. Given that algal turfs are a crucial component of herbivorous/detritivorous trophic pathways, this could represent a key juncture at which these metals enter food chains

Projected near-future CO2 levels increase activity and alter defensive behaviours in the tropical squid Idiosepius pygmaeus

Carbon dioxide (CO2) levels projected to occur in the oceans by the end of this century cause a range of behavioural effects in fish, but whether other highly active marine organisms, such as cephalopods, are similarly affected is unknown. We tested the effects of projected future CO2 levels (626 and 956 µatm) on the behaviour of male two-toned pygmy squid, Idiosepius pygmaeus. Exposure to elevated CO2 increased the number of active individuals by 19-25% and increased movement (number of line-crosses) by nearly 3 times compared to squid at present-day CO2. Squid vigilance and defensive behaviours were also altered by elevated CO2 with >80% of individuals choosing jet escape responses over defensive arm postures in response to a visual startle stimulus, compared with 50% choosing jet escape responses at control CO2. In addition, more escape responses were chosen over threat behaviours in body pattern displays at elevated CO2 and individuals were more than twice as likely to use ink as a defence strategy at 956 µatm CO2, compared with controls. Increased activity could lead to adverse effects on energy budgets as well as increasing visibility to predators. A tendency to respond to a stimulus with escape behaviours could increase survival, but may also be energetically costly and could potentially lead to more chases by predators compared with individuals that use defensive postures. These results demonstrate that projected future ocean acidification affects the behaviours of a tropical squid species