Authentication of cow feeding and geographic origin on milk using visible and near-infrared spectroscopy.

International audience; The ability of near-infrared spectroscopy to trace cow feeding systems and farming altitude was tested on 486 bulk milk samples from France and northwestern Italy. Milks were grouped into feeding systems according to the main forage in the diet. Partial least square discriminant analysis correctly classified 95.5, 91.5, and 93.3% of pasture versus maize silage, hay, and fermented herbage feeding systems, respectively. Discrimination was slightly less successful when diets with large proportions of the nondominant forage were included in each group. Near-infrared spectroscopy correctly discriminated no-pasture from pasture milk, even with only 30% of pasture in the diet (5.4% cross-validation error), and the error stabilized when pasture exceeded 70% (2.5% error). Near-infrared spectroscopy did not reliably trace milk geographic origin when the feeding system effect was isolated from the altitude effect. These findings may be usefully exploited for the authentication of dairy products

Prediction of bulk milk fatty acid composition based on farming practices collected through on-farm surveys

International audience; The aim of this study was to predict the fatty acid (FA) composition of bulk milk using data describing farming practices collected via on-farm surveys. The FA composition of 1,248 bulk cow milk samples and the related farming practices were collected from 20 experiments led in 10 different European countries at 44 degrees N to 60 degrees N latitude and sea level to 2,000 m altitude. Farming practice-based FA predictions [coefficient of determination (R-2) >0.50] were good for C16:0, C17:0, saturated FA, polyunsaturated FA, and odd-chain FA, and very good (R-2 >= 0.60) for trans-11 C18:1, trans-10 + trans-11 C18:1, cis-9,trans-11 conjugated linoleic acid, total trans FA, C18:3n-3, n-6:n-3 ratio, and branched-chain FA. Fatty acids were predicted by cow diet composition and by the altitude at which milk was produced, whereas animal-related factors (i.e., lactation stage, breed, milk yield, and proportion of primiparous cows in the herd) were not significant in any of the models. Proportion of fresh herbage in the cow diet was the main predictor, with the highest effect in almost all FA models. However, models built solely on conserved forage-derived samples gave good predictions for odd-chain FA, branched-chain FA, trans-10 C18:1 and C18:3n-3 (R-2 >= 0.46, 0.54, 0.52, and 0.70, respectively). These prediction models could offer farmers a valuable tool to help improve the nutritional quality of the milk they produce

A Solve-RD ClinVar-based reanalysis of 1522 index cases from ERN-ITHACA reveals common pitfalls and misinterpretations in exome sequencing

Purpose Within the Solve-RD project (https://solve-rd.eu/), the European Reference Network for Intellectual disability, TeleHealth, Autism and Congenital Anomalies aimed to investigate whether a reanalysis of exomes from unsolved cases based on ClinVar annotations could establish additional diagnoses. We present the results of the “ClinVar low-hanging fruit” reanalysis, reasons for the failure of previous analyses, and lessons learned. Methods Data from the first 3576 exomes (1522 probands and 2054 relatives) collected from European Reference Network for Intellectual disability, TeleHealth, Autism and Congenital Anomalies was reanalyzed by the Solve-RD consortium by evaluating for the presence of single-nucleotide variant, and small insertions and deletions already reported as (likely) pathogenic in ClinVar. Variants were filtered according to frequency, genotype, and mode of inheritance and reinterpreted. Results We identified causal variants in 59 cases (3.9%), 50 of them also raised by other approaches and 9 leading to new diagnoses, highlighting interpretation challenges: variants in genes not known to be involved in human disease at the time of the first analysis, misleading genotypes, or variants undetected by local pipelines (variants in off-target regions, low quality filters, low allelic balance, or high frequency). Conclusion The “ClinVar low-hanging fruit” analysis represents an effective, fast, and easy approach to recover causal variants from exome sequencing data, herewith contributing to the reduction of the diagnostic deadlock

Etude de l'utilisation du territoire en élevage herbager. L'exemple du réseau extensif bovin Limousin

National audienc

Des vaches laitières robustes : qu’est-ce les éleveurs en disent ?

International audienceAnimal robustness has been identified as an adaptive tool in the agroecological transition; it is the ability of an animal to maintain performance at expected levels in a fluctuating environment. The objective of this study was to analyse how dairy farmers characterise and assess the robustness of their animals. From interviews with 39 dairy farmers emerged 4 main definitions of robust daily cows: "adapted to the environment and environmental variability", "tough with a strong temperament.", "productive and economical", or "less productive but displaying endurance". These definitions differed based on i) the phenotypic traits of the animals upon which farmers based their descriptions (e.g., production, morphology, docility); ii) the time scale considered; and iii) the farmer's relationship with the environment (i.e., control vs. adaptation). This diversity of viewpoints should be accounted for in exchanges between farmers and agricultural advisors

Étude des pratiques d'allotement dans les exploitations d'élevage: Proposition d'une méthode et illustration en élevage bovin extensif

International audienc

Taking labour into account in the analysis of extensive grazing systems

International audienc

Coccinelle : un système d’élevage laitier de montagne éco-citoyen

International audienc

Reseau extensif bovin limousin : caracteristiques generales des exploitations et elements de reflexion

National audienc

The effect of feeding sequence on fat concentration in milk

International audienc