DIVERSIFY: Ecology-inspired software evolution for diversity emergence

update for BASE on Sep 08 2018 22:43:36International audienceDIVERSIFY is an EU funded project, which aims at favoring spontaneous diversification in software systems in order to increase their adaptive capacities. This objective is founded on three observations: software has to constantly evolve to face unpredictable changes in its requirements, execution environment or to respond to failure (bugs, attacks, etc.); the emergence and maintenance of high levels of diversity are essential to provide adaptive capacities to many forms of complex systems, ranging from ecological and biological systems to social and economical systems; diversity levels tend to be very low in software systems. DIVERSIFY explores how the biological evolutionary mechanisms, which sustain high levels of biodiversity in ecosystems (speciation, phenotypic plasticity and natural selection) can be translated in software evolution principles. In this work, we consider evolution as a driver for diversity as a means to increase resilience in software systems. In particular, we are inspired by bipartite ecological relationships to investigate the automatic diversification of the server side of a client-server architecture. This type of software diversity aims at mitigating the risks of software monoculture. The consortium gathers researchers from the software-intensive, distributed systems and the ecology areas in order to transfer ecological concepts and processes as software design principles

Structural blueprint and ontogeny determine the adaptive value of the plastic response to competition in clonal plants: a modelling approach

International audienceLocal competitive interactions strongly influence plant community dynamics. To maintain their performance under competition, clonal plants may plastically modify their network architecture to grow in the direction of least interference. The adaptive value of this plastic avoidance response may depend, however, on traits linked with the plant's structural blueprint and ontogeny. We tested this hypothesis using virtual populations. We used an Individual Based Model to simulate competitive interactions among clones within a plant population. Clonal growth was studied under three competition intensities in plastic and non-plastic individuals. Plasticity buffered the negative impacts of competition at intermediate densities of competitors by promoting clone clumping. Success despite competition was promoted by traits linked with (1) the plant's structural blueprint (weak apical dominance and sympodial growth) and (2) ontogenetic processes, with an increasing or a decreasing dependence of the elongation process on the branch generation level or length along the competition intensity gradient respectively. The adaptive value of the plastic avoidance response depended on the same traits. This response only modulated their importance for clone success. Our results show that structural blueprint and ontogeny can be primary filters of plasticity and can have strong implications for evolutionary ecology, as they may explain why clonal plants have developed many species-specific plastic avoidance behaviours

Ecological corridors homogenize plant root endospheric mycobiota

Ecological corridors promote species coexistence in fragmented habitats where dispersal limits species fluxes. The corridor concept was developed and investigated with macroorganisms in mind, while microorganisms, the invisible majority of biodiversity, were disregarded. We analyzed the effect of corridors on the dynamics of endospheric fungal assemblages associated with plant roots at the scale of 1 m over 2 years (i.e. at five time points) by combining an experimental corridor-mesocosm with high-throughput amplicon sequencing. We showed that plant root endospheric mycobiota were sensitive to corridor effects when the corridors were set up at a small spatial scale. The endospheric mycobiota of connected plants had higher species richness, lower beta-diversity, and more deterministic assembly than the mycobiota of isolated plants. These effects became more pronounced with the development of host plants. Biotic corridors composed of host plants may thus play a key role in the spatial dynamics of microbial communities and may influence microbial diversity and related ecological functions

How Past and Present Influence the Foraging of Clonal Plants?

Clonal plants spreading horizontally and forming a network structure of ramets exhibit complex growth patterns to maximize resource uptake from the environment. They respond to spatial heterogeneity by changing their internode length or branching frequency. Ramets definitively root in the soil but stay interconnected for a varying period of time thus allowing an exchange of spatial and temporal information. We quantified the foraging response of clonal plants depending on the local soil quality sampled by the rooting ramet (i.e. the present information) and the resource variability sampled by the older ramets (i.e. the past information). We demonstrated that two related species, Potentilla reptans and P. anserina, responded similarly to the local quality of their environment by decreasing their internode length in response to nutrient-rich soil. Only P. reptans responded to resource variability by decreasing its internode length. In both species, the experience acquired by older ramets influenced the plastic response of new rooted ramets: the internode length between ramets depended not only on the soil quality locally sampled but also on the soil quality previously sampled by older ramets. We quantified the effect of the information perceived at different time and space on the foraging behavior of clonal plants by showing a non-linear response of the ramet rooting in the soil of a given quality. These data suggest that the decision to grow a stolon or to root a ramet at a given distance from the older ramet results from the integration of the past and present information about the richness and the variability of the environment

Updates on the Virtual Prairie Project.

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La plasticité des traits d'histoire de vie favorisant le caractère invasif des plantes. Exemple de Solidago gigantea

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Updates on the Virtual Prairie Project.

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Effect of current and past neighborhood composition on plant response to competition

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Floristic and ecological diversity of Ranunculus aquatic habitats in the sub-atlantic range: Implications for conservation.

International audienceRanunculus communities have been identified by the European Community Directive on Conservation of Natural and Semi-Natural Habitats as a key habitat in need of protection. The ecological requirements and floristic composition of three Ranunculus communities were investigated in North-Eastern France. We also aimed to determine the relationships between environmental parameters, Ranunculus abundance and species richness. R. fluitans communities clearly differed from the other communities by a higher evenness and species richness and by the occurrence of specific species. In contrast, R. penicillatus and R. peltatus communities displayed similar floristic content. Three different sub-associations were however identified within these communities. If alkalinity was determinant in isolating R. fluitans communities from the other stretches, the ecological ranges of the three communities strongly overlapped while considering parameters linked with other resources or with physical constraints. Further, no significant correlations were highlighted between environmental parameters, Ranunculus abundance and species richness. With respect to conservation, these observations may indicate the particular difficulty in defining each Ranunculus habitat on a European scale, and identify several key points which need to be taken into account when evaluating their status