Comparison between an integral and algebraic formulation for the eddy diffusivity using the Copenhagen experimental dataset

In this work an algebraic formulation to evaluate the eddy diffusivities in the Convective Boundary Layer (CBL) is derived. The expression depends on the turbulence properties (z height dependence) and the distance from the source. It is based on the turbulent kinetic energy spectra and Taylor’s statistical diffusion theory. It has been tested and compared through an experimental dataset, with another complex integral formulation taken from the literature. The Agreement between the complex integral formulation and simple algebraic expression points out that this new parameterization is valid and can be used as a surrogate for eddy diffusivities in the inhomogeneous convective turbulence present in the CBL. The validation shows that the proposed algebraic vertical eddy diffusivity is suitable for application in advanced air quality regulatory models

The Association of Compact Groups of Galaxies with Large-scale Structures

We use various samples of compact groups (CGs) to examine the types of association CGs have with rich and poor clusters of galaxies at low (z~0.04) and intermediate (z~0.1) redshifts. We find that ~10-20 % of CGs are associated with rich clusters and a much larger fraction with poorer clusters or loose groups. Considering the incompleteness of catalogs of poorer systems at intermediate redshift, our result is consistent with all CGs at intermediate redshift being associated with larger-scale systems. The richness of the clusters associated with CGs significantly increases from z~0.04 to z~0.1, while their Bautz-Morgan type changes from early to late type for the same range in z. Neither trend is compatible with a selection effect in the cluster catalogs used. We find earlier morphological types of galaxies to be more frequent in CGs associated with larger-scale structures, compared to those in CGs not associated to such structures. We consider this as new evidence that CGs are part of the large-scale structure formation process and that they may play an important role in the evolution of galaxies in these structures.Comment: 5 pages, no figures, Proc. ESO Workshop "Groups of galaxies in the nearby Universe", Santiago, Chile, 5-9 Dec. 2005, ESO Astrophysics Symposia, eds. I. Saviane, V. Ivanov & J. Borissova, Springer-Verlag; very minor revision of text on 15 Mar 2006, added one referenc

Chemical evolution of CO2 ices under processing by ionizing radiation: characterization of nonobserved species and chemical equilibrium phase with the employment of PROCODA Code

Laboratory astrophysics and astrochemistr

NMD inhibition fails to identify tumour suppressor genes in microsatellite stable gastric cancer cell lines

BACKGROUND: Gastric cancers frequently show chromosomal alterations which can cause activation of oncogenes, and/or inactivation of tumour suppressor genes. In gastric cancer several chromosomal regions are described to be frequently lost, but for most of the regions, no tumour suppressor genes have been identified yet. The present study aimed to identify tumour suppressor genes inactivated by nonsense mutation and deletion in gastric cancer by means of GINI (gene identification by nonsense mediated decay inhibition) and whole genome copy number analysis. METHODS: Two non-commercial gastric cancer cell lines, GP202 and IPA220, were transfected with siRNA directed against UPF1, to specifically inhibit the nonsense mediated decay (NMD) pathway, and with siRNA directed against non-specific siRNA duplexes (CVII) as a control. Microarray expression experiments were performed in triplicate on 4 × 44 K Agilent arrays by hybridizing RNA from UPF1-transfected cells against non-specific CVII-transfected cells. In addition, array CGH of the two cell lines was performed on 4 × 44K agilent arrays to obtain the DNA copy number profiles. Mutation analysis of GINI candidates was performed by sequencing. RESULTS: UPF1 expression was reduced for >70% and >80% in the GP202 and IPA220 gastric cancer cell lines, respectively. Integration of array CGH and microarray expression data provided a list of 134 and 50 candidate genes inactivated by nonsense mutation and deletion for GP202 and IPA220, respectively. We selected 12 candidate genes for mutation analysis. Of these, sequence analysis was performed on 11 genes. One gene, PLA2G4A, showed a silent mutation, and in two genes, CTSA and PTPRJ, missense mutations were detected. No nonsense mutations were detected in any of the 11 genes tested. CONCLUSION: Although UPF1 was substantially repressed, thus resulting in the inhibition of the NMD system, we did not find genes inactivated by nonsense mutations. Our results show that the GINI strategy leads to a high number of false positives

Statistical Theory for Incoherent Light Propagation in Nonlinear Media

A novel statistical approach based on the Wigner transform is proposed for the description of partially incoherent optical wave dynamics in nonlinear media. An evolution equation for the Wigner transform is derived from a nonlinear Schrodinger equation with arbitrary nonlinearity. It is shown that random phase fluctuations of an incoherent plane wave lead to a Landau-like damping effect, which can stabilize the modulational instability. In the limit of the geometrical optics approximation, incoherent, localized, and stationary wave-fields are shown to exist for a wide class of nonlinear media.Comment: 4 pages, REVTeX4. Submitted to Physical Review E. Revised manuscrip

Neoctangium travassosi (Digenea: Microscaphidiidae) in sea turtles from South America

ABSTRACT Sea turtles are endangered animals that present cosmopolitan distribution. Anthropic actions have been considered important causes for the reduction of sea turtle population, but natural aspects such as parasitism may also contribute to their decline. This study aimed to report the occurrence of parasites in stranded dead sea turtles found in an area known as Potiguar Basin, northeastern Brazil, from 2010 to 2019. They were identified and classified according to the carapace length. At post-mortem analyses all organs were examined, parasites collected and morphologically identified. Ecological parasitic indexes as prevalence (P), mean intensity (MI) and mean abundance (MA) were calculated. A total of 80 Chelonia mydas and 5 Eretmochelys imbricata were assessed. Neoctangium travassosi was detected in both species presenting P = 20%, MI = 4.19 and MA = 0.84 for C. mydas and P = 60%, MI = 1.67 and MA = 1.0 for E. imbricata. This is the first report of N. travassosi parasitizing E. imbricata in South America. Finally, the retrieval of these parasites is a warning regarding the need for further studies to assess the impact of this parasitism on the health and conservation of sea turtles

Tick-borne pathogens infecting dogs from a highland swamp area

RESUMO Objetivou-se neste estudo relatar a frequência e a identidade de patógenos transmitidos por carrapatos em cães residentes de uma área caracterizada por brejo de alta altitude. Amostras sanguíneas (n=203) foram coletadas e molecularmente analisadas via PCR (Babesia spp., Hepatozoon spp., Anaplasma spp. e Ehrlichia spp.) e sequenciamento de DNA. De todas as amostras analisadas, 8,87% (18/203) foram positivas a algum patógeno transmitido por carrapato. Especificamente, 5,42% (11/203) e 3,45% (7/203) foram positivos a Anaplasma platys e Ehrlichia canis, respectivamente. Este estudo fornece, pela primeira vez, evidência científica de infecção de cães por esses patógenos nessa área de alta altitude e reforça o provável papel de R. sanguineus s.l. como vetor de A. platys, principalmente considerando.se que muitos animais positivos eram infestados por essa espécie de carrapato