The Histone Deacetylase Complex (HDC) 1 protein of Arabidopsis thaliana has the capacity to interact with multiple proteins including histone 3-binding proteins and histone 1 variants

Intrinsically disordered proteins can adopt multiple conformations thereby enabling interaction with a wide variety of partners. They often serve as hubs in protein interaction networks. We have previously shown that the Histone Deacetylase Complex (HDC) 1 protein from Arabidopsis thaliana interacts with histone deacetylases and quantitatively determines histone acetylation levels, transcriptional activity and several phenotypes, including ABA-sensitivity during germination, vegetative growth rate and flowering time. HDC1-type proteins are ubiquitous in plants but they contain no known structural or functional domains. Here we explored the protein interaction spectrum of HDC1. In addition to binding histone deacetylases, HDC1 directly interacted with core histone H3-binding proteins and co-repressor associated proteins, but not with H3 or the co-repressors themselves. Surprisingly, HDC1 was also able to interact with variants of the linker histone H1. Truncation of HDC1 to the ancestral core sequence narrowed the spectrum of interactions and of phenotypic outputs but maintained binding to a H3-binding protein and to H1. The results indicate a potential link between H1 and histone modifying complexes

An evaluation of understory vegetation dynamics, ecosystem resilience and state and transition ecological theory in an eastern Oregon ponderosa pine forest

Relatively recent increases in ponderosa pine abundance have effected unprecedented changes to ecosystem structure and function. Efforts to restore ponderosa pine systems are often focused on the manipulation of tree structure and the re-introduction of a more natural fire regime. Successful restoration should also incorporate understory components but information addressing changes in understory species is minimal for Pacific Northwest ponderosa pine forests. Moreover, state and transition models (STM) derived from the concepts of non-equilibrium ecology may be appropriate for characterizing ecosystem dynamics in modern ponderosa pine forests, however this approach has not previously been used. The focus of this research was to evaluate ecosystem dynamics within a hypothesized STM framework and to experimentally assess the existence of model components with particular emphasis on understanding understory species dynamics. The analyses of vegetation, soil, and environmental attributes measured in a eastern Oregon ponderosa pine forest indicated that increased ponderosa pine occupancy modified the under-canopy environment through alterations in light, nitrogen availability, and soil temperature and was related to reductions in understory species diversity caused by a major shift in understory character away from the dominance of perennial bunchgrasses. Light availability appeared to be the most influential driver in understory species distribution. Similar results were observed in a greenhouse experiment that identified high light intensity as significant in generating increased Festuca idahoensis Elmer growth, biomass and vigor. A seed bank assessment to evaluate recovery potential from diminished understory conditions indicated that understory species dominant in open ponderosa pine forests do not form a persistent seed bank and can not be relied upon as a tool for their recovery. These data described ecosystem dynamics in accordance with the hypothesized STM model. Loss of ecosystem resilience associated with a fire loss threshold can initiate additional degradation in the understory component, however, pine influenced alterations to the under-canopy environment did not appear irreparable and restoration practices that reduce pine occupancy should enhance the conditions for perennial bunchgrass growth. Successful restoration will require the re-introduction of desired understory species seeds or other viable plant material when considering stands that have lost the understory component

A review of the ecological effectiveness of subtidal marine reserves in Central California, Part I: Synopsis of scientific investigations

Marine reserves, often referred to as no-take MPAs, are defined as areas within which human activities that can result in the removal or alteration of biotic and abiotic components of an ecosystem are prohibited or greatly restricted (NRC 2001). Activities typically curtailed within a marine reserve are extraction of organisms (e.g., commercial and recreational fishing, kelp harvesting, commercial collecting), mariculture, and those activities that can alter oceanographic or geologic attributes of the habitat (e.g., mining, shore-based industrial-related intake and discharges of seawater and effluent). Usually, marine reserves are established to conserve biodiversity or enhance nearby fishery resources. Thus, goals and objectives of marine reserves can be inferred, even if they are not specifically articulated at the time of reserve formation. In this report, we review information about the effectiveness of the three marine reserves in the Monterey Bay National Marine Sanctuary (Hopkins Marine Life Refuge, Point Lobos Ecological Reserve, Big Creek Ecological Reserve), and the one in the Channel Islands National Marine Sanctuary (the natural area on the north side of East Anacapa Island). Our efforts to objectively evaluate reserves in Central California relative to reserve theory were greatly hampered for four primary reasons; (1) few of the existing marine reserves were created with clearly articulated goals or objectives, (2) relatively few studies of the ecological consequences of existing reserves have been conducted, (3) no studies to date encompass the spatial and temporal scope needed to identify ecosystem-wide effects of reserve protection, and (4) there are almost no studies that describe the social and economic consequences of existing reserves. To overcome these obstacles, we used several methods to evaluate the effectiveness of subtidal marine reserves in Central California. We first conducted a literature review to find out what research has been conducted in all marine reserves in Central California (Appendix 1). We then reviewed the scientific literature that relates to marine reserve theory to help define criteria to use as benchmarks for evaluation. A recent National Research Council (2001) report summarized expected reserve benefits and provided the criteria we used for evaluation of effectiveness. The next step was to identify the research projects in this region that collected information in a way that enabled us to evaluate reserve theory relative to marine reserves in Central California. Chapters 1-4 in this report provide summaries of those research projects. Contained within these chapters are evaluations of reserve effectiveness for meeting specific objectives. As few studies exist that pertain to reserve theory in Central California, we reviewed studies of marine reserves in other temperate and tropical ecosystems to determine if there were lessons to be learned from other parts of the world (Chapter 5). We also included a discussion of social and economic considerations germane to the public policy decision-making processes associated with marine reserves (Chapter 6). After reviewing all of these resources, we provided a summary of the ecological benefits that could be expected from existing reserves in Central California. The summary is presented in Part II of this report. (PDF contains 133 pages.

Dust Stratification in Young Circumstellar Disks

We present high-resolution infrared spectra of four YSOs (T Tau N, T Tau S, RNO 91, and HL Tau). The spectra exhibit narrow absorption lines of 12CO, 13CO, and C18O as well as broad emission lines of gas phase12CO. The narrow absorption lines of CO are shown to originate from the colder circumstellar gas. We find that the line of sight gas column densities resulting from the CO absorption lines are much higher than expected for the measured extinction for each source and suggest the gas to dust ratio is measuring the dust settling and/or grain coagulation in these extended disks. We provide a model of turbulence, dust settling and grain growth to explain the results. The techniques presented here allow us to provide some observationally-motivated bounds on accretion disk alpha in protostellar systems

Fine Scale Nest Site Selection of Greater Sage-Grouse In The Centennial Valley, Montana

The purpose of this study was to determine fine scale nest site selection of greater sage-grouse (Centrocercus urophasianus) in the Centennial Valley, MT. A total of ninety nests were found during 2014-2015 using radio-collared sage-grouse. Vegetation surveys were conducted at nests and random sites that measured the nest shrub and the cover available within 3m of the nest. Length of the branch over the nest (Lgth.LB), average axis width of the nest shrub (AvgAxis), lateral cover of the nest shrub (LCShrub), aerial cover of the nest shrub (ACShrub), and height of the lower branch over the nest (Ht.LB) were the habitat variables that received the most support. All habitat variables that were included in the top model were nest shrub morphological characteristics and cover provided by the nest shrub. Therefore, there is strong support that sage-grouse in the Centennial Valley are selecting nest sites based on the morphology of the nest shrub and the cover provided by that nest shrub. None of the habitat variables associated with herbaceous cover received much support for inclusion in our models. On average, residual cover (i.e. grass from previous year) provided concealment for only 4% of the nest bowl. The relative probability of a shrub being selected for a nest site is maximized when Lgth.LB >75cm long, AvgAxis >130cm wide, LCShrub >80%, and ACShrub > 70%. Managers should focus on conserving mountain big sagebrush (Artemisia tridentata ssp. vaseyana) and three-tip sagebrush (Artemisia tripartita) habitats because they were more likely to meet those shrub characteristics

Structural phase transitions in the Ag2Nb4O11 – Na2Nb4O11 solid solution

The phase transitions between various structural modifications of the natrotantite-structured system xAg2Nb4O11 – (1-x)Na2Nb4O11 have been investigated and a phase diagram constructed as a function of temperature and composition. This shows three separate phase transition types: (1) paraelectric – ferroelectric, (2) rhombohedral – monoclinic and (3) a phase transition within the ferroelectric rhombohedral zone between space groups R3c and R3. The parent structure for the entire series has space group R-3c. Compositions with x > 0.75 are rhombohedral at all temperatures whereas compositions with x < 0.75 are all monoclinic at room temperature and below. At x = 0.75, rhombohedral and monoclinic phases coexist with the phase boundary below room temperature being virtually temperature-independent. The ferroelectric phase boundary extends into the monoclinic phase field. No evidence was found for the R3–R3c phase boundary extending into the monoclinic phase field and it is concluded that a triple point is formed

Visible camera cryostat design and performance for the SuMIRe Prime Focus Spectrograph (PFS)

We describe the design and performance of the SuMIRe Prime Focus Spectrograph (PFS) visible camera cryostats. SuMIRe PFS is a massively multi-plexed ground-based spectrograph consisting of four identical spectrograph modules, each receiving roughly 600 fibers from a 2394 fiber robotic positioner at the prime focus. Each spectrograph module has three channels covering wavelength ranges 380~nm -- 640~nm, 640~nm -- 955~nm, and 955~nm -- 1.26~um, with the dispersed light being imaged in each channel by a f/1.07 vacuum Schmidt camera. The cameras are very large, having a clear aperture of 300~mm at the entrance window, and a mass of $\sim$280~kg. In this paper we describe the design of the visible camera cryostats and discuss various aspects of cryostat performance

A questionnaire elicitation of surgeons' belief about learning within a surgical trial

PMID: 23145113 [PubMed - indexed for MEDLINE] PMCID: PMC3493499 Free PMC ArticlePeer reviewedPublisher PD

Factors affecting SME owner-managers\u27 willingness to share knowledge online in rural local business networks

This article integrates typically separate SME research on e-commerce, business networking, and knowledge management into a model explaining factors influencing the willingness of SME owner-managers to share knowledge online in business networks in rural districts. This is important because e-commerce can assist owner-managers, often dispersed in rural districts, to share knowledge between face-to-face networking events. The main factors associated with willingness to share knowledge online were their willingness to share knowledge face-to-face and their intensity of Internet use. Entrepreneurial factors such as owner-managers\u27 expectations of rapid growth, trading outside the district, and seeking information about customers/competitors were indirectly associated with online sharing via intensity of Internet use only. The model suggests network coordinators could encourage online knowledge sharing by assisting owner-managers to see the business value of e-commerce and by ensuring that networking events are suitable for owner-managers, whether or not they have entrepreneurial goals, to facilitate face-to-face knowledge sharing

The burden of peripheral intravenous catheters in older hospital inpatients : a national cross-sectional study part of the One Million Global Peripheral Intravenous Catheters Collaboration

Objectives: To investigate the burden of peripheral intravenous catheters (PIVCs) in older hospitalised patients. Methods: A cross-sectional prospective observational study (2014/2015) to describe the characteristics, indications and outcomes of PIVCs among patients aged ≥65 from 65 Australian hospitals. Results: Amongst 2179 individual PIVCs (in 2041 patients, mean age 77.6 years, 45% female, 58% in NSW), 43% were inserted by doctors and 74% used that day, meaning 25% were ‘idle’. Overall, 18% (393/2179) exhibited signs of PIVC-related complications. Most commonly exhibited PIVC-related complications were tenderness (4.1%) and local redness (1.8%). Nearly one in three (29.1%) dressings was soiled, loosened or had come off, and only 36.8% had the time and date documented on the dressing. Both infusing IV medications (aOR 1.74, 95% CI 1.28–2.38, p 84 years) was independently associated with lower likelihood of a high score (aOR 0.71, 95% CI 0.54–0.94, p = 0.02). Conclusions: Given 1 in 5 PIVCs were identified with having complications, further research should focus on optimising PIVC use in older patients