Oncidiinae (Orchidaceae) on the great curve of the Xingu River, Pará state, Brazil

Abstract Among the studies on Orchidaceae in the Amazon, none comprised the region of the Great Curve of the Xingu River, located in the lower Xingu river. The aim of this study was to inventory and taxonomically study the species of Oncidiinae (Orchidaceae) in the Great Curve of the Xingu River, Pará state. The floristic survey was performed in the area of the Belo Monte hydroelectric plant, in the Vitória do Xingu municipality, centrally inserted in the called Great Curve of the Xingu River. Botanical collections were accomplished between June 2011 and December 2013. A total of 27 species of Oncidiinae, distributed in 15 genera, was inventoried in the study area. Notylia Lindl. and Trichocentrum Poepp. & Endl. were the richest genera, with five and four species, respectively, followed by Erycina Lindl., Ionopsis Kunth, Lockhartia Hook., Macradenia R.Br., and Ornithocephalus Hook., with two species each. The remaining eight genera are represented by a single species each in the study area. Morphological descriptions, a key for taxonomic identification, illustrations, and comments on distribution, ecology, phenology and morphology are provided for all inventoried species

Gene expression in coffee

Coffee is cultivated in more than 70 countries of the intertropical belt where it has important economic, social and environmental impacts. As for many other crops, the development of molecular biology technics allowed to launch research projects for coffee analyzing gene expression. In the 90s decade, the first expression studies were performed by Northern-blot or PCR, and focused on genes coding enzymes of the main compounds (e.g., storage proteins, sugars, complex polysaccharides, caffeine and chlorogenic acids) found in green beans. Few years after, the development of 454 pyrosequencing technics generated expressed sequence tags (ESTs) obviously from beans but also from other organs (e.g., leaves and roots) of the two main cultivated coffee species, Coffea arabica and C. canephora. Together with the use of real-time quantitative PCR, these ESTs significantly raised the number of coffee gene expression studies leading to the identification of (1) key genes of biochemical pathways, (2) candidate genes involved in biotic and abiotic stresses as well as (3) molecular markers essential to assess the genetic diversity of the Coffea genus, for example. The development of more recent Illumina sequencing technology now allows large-scale transcriptome analysis in coffee plants and opens the way to analyze the effects on gene expression of complex biological processes like genotype and environment interactions, heterosis and gene regulation in polypoid context like in C. arabica. The aim of the present review is to make an extensive list of coffee genes studied and also to perform an inventory of large-scale sequencing (RNAseq) projects already done or on-going

Manipulation of Agricultural Habitats to Improve Conservation Biological Control in South America

International audienceStable and diversified agroecosystems provide farmers with important ecosystem services, which are unfortunately being lost at an alarming rate under the current conventional agriculture framework. Nevertheless, this concern can be tackled by using ecological intensification as an alternative strategy to recuperate ecosystem services (e.g., biological control of pests). To this end, the manipulation of agricultural habitats to enhance natural enemy conservation has been widely explored and reported in Western Europe and North America, whereas in other parts of the world, the investigation of such topic is lagging behind (e.g., South America). In this forum, we gathered published and unpublished information on the different ecological habitat management strategies that have been implemented in South America and their effects on pest control. Additionally, we identify the various challenges and analyze the outlook for the science of conservation biological control in South America. More specifically, we reviewed how different agricultural practices and habitat manipulation in South America have influenced pest management through natural enemy conservation. The main habitat manipulations reported include plant diversification (intercropping, insectary plants, agroforestry), conservation and management of non-crop vegetation, and application of artificial foods. Overall, we noticed that there is a significant discrepancy in the amount of research on conservation biological control among South American countries, and we found that, although intercropping, polycultures, and crop rotation have been reported in agroecosystems since pre-Inca times, more systematic studies are required to evaluate the true effects of habitat management to implement conservation biological control for pest control in South America