An efficient automated parameter tuning framework for spiking neural networks

As the desire for biologically realistic spiking neural networks (SNNs) increases, tuning the enormous number of open parameters in these models becomes a difficult challenge. SNNs have been used to successfully model complex neural circuits that explore various neural phenomena such as neural plasticity, vision systems, auditory systems, neural oscillations, and many other important topics of neural function. Additionally, SNNs are particularly well-adapted to run on neuromorphic hardware that will support biological brain-scale architectures. Although the inclusion of realistic plasticity equations, neural dynamics, and recurrent topologies has increased the descriptive power of SNNs, it has also made the task of tuning these biologically realistic SNNs difficult. To meet this challenge, we present an automated parameter tuning framework capable of tuning SNNs quickly and efficiently using evolutionary algorithms (EA) and inexpensive, readily accessible graphics processing units (GPUs). A sample SNN with 4104 neurons was tuned to give V1 simple cell-like tuning curve responses and produce self-organizing receptive fields (SORFs) when presented with a random sequence of counterphase sinusoidal grating stimuli. A performance analysis comparing the GPU-accelerated implementation to a single-threaded central processing unit (CPU) implementation was carried out and showed a speedup of 65× of the GPU implementation over the CPU implementation, or 0.35 h per generation for GPU vs. 23.5 h per generation for CPU. Additionally, the parameter value solutions found in the tuned SNN were studied and found to be stable and repeatable. The automated parameter tuning framework presented here will be of use to both the computational neuroscience and neuromorphic engineering communities, making the process of constructing and tuning large-scale SNNs much quicker and easier

Sonoluminescence as a QED vacuum effect. II: Finite Volume Effects

In a companion paper [quant-ph/9904013] we have investigated several variations of Schwinger's proposed mechanism for sonoluminescence. We demonstrated that any realistic version of Schwinger's mechanism must depend on extremely rapid (femtosecond) changes in refractive index, and discussed ways in which this might be physically plausible. To keep that discussion tractable, the technical computations in that paper were limited to the case of a homogeneous dielectric medium. In this paper we investigate the additional complications introduced by finite-volume effects. The basic physical scenario remains the same, but we now deal with finite spherical bubbles, and so must decompose the electromagnetic field into Spherical Harmonics and Bessel functions. We demonstrate how to set up the formalism for calculating Bogolubov coefficients in the sudden approximation, and show that we qualitatively retain the results previously obtained using the homogeneous-dielectric (infinite volume) approximation.Comment: 23 pages, LaTeX 209, ReV-TeX 3.2, five figure

Context, Challenges, And Tensions In Global Efforts To Engage Men In The Prevention Of Violence Against Women: An Ecological Analysis

As gender-based violence prevention programs around the world increasingly include efforts to engage men and boys as antiviolence allies, both the profound benefits and the inherent complexities of these efforts are emerging. Acknowledging and exploring tensions associated with engaging men is an important element of thoughtfully fostering menÕs antiviolence ally movements so as to both respectfully invite men into antiviolence work and create effective, gender-equitable prevention programming. To this end, this study presents descriptive findings regarding challenges associated with menÕs engagement programming from in-depth interviews with twenty-nine representatives of organizations that engage men and boys in preventing violence against women and girls in Africa, Asia, Europe, Oceania, and North and South America. Programs reported negotiating complex issues related to gender, the intersectional nature of menÕs identities, and establishing legitimacy and sustainability within communities while maintaining ideological focus and consistency. Additionally, programs reported that these tensions manifest across ecological layers of analysis, and impact both the participation of individual men and the programsÕ experiences in community and national contexts

Morphometric characteristics of pyloric gastric glands at experimental acute gastritis and after administration of ‘Platex-Placental’ medication on the background of experimental acute gastritis

В роботі встановлена динаміка змін середніх метричних показників воротарних залоз шлунка при гострому експериментальному гастриті, після введення препарату «Платекс-плацентарний» (кріоконсервована тканина плаценти) та після введення препарату «Платекс-плацентарний» на тлі гострого експериментального гастриту. Виявлена позитивна динаміка дії препарату «Платекс-плацентарний» на швидкість перебігу та перебудову захисних властивостей воротарних залоз у відповідь на гострий запальний процес.; В работе установлена динамика изменений средних показателей привратниковых желез желудка при остром экспериментальном гастрите, после введения препарата «Платекс-плацентарный» (криоконсервированная ткань плаценты) и после введения препарата «Платекс-плацентарный» на фоне острого экспериментального гастрита. Выявлена положительная динамика действия препарата «Платекс-плацентарный» на скорость протекания и перестройку защитных свойств привратниковых желез в ответ на острый воспалительный процесс.; The study descrides the dynamics of changes in average indices of pyloric gastric glands at experimental acute gastritis, after administration of ‘Platex-Placental’ medication, and after administration of ‘Platex-Placental’ medication on a background of experimental acute gastritis. The positive outcomes were found after administration of ‘Platex-Placental’ medication in terms of inflammation course as well as reorganization of defence peculiarities of pyloric glands as a response to an acute inflammation

Pattern Transfer of Sub-10 nm Features via Tin-Containing Block Copolymers

Tin-containing block copolymers were investigated as materials for nanolithographic applications. Poly(4-trimethylstannylstyrene-block-styrene) (PSnS-PS) and poly(4-trimethylstannylstyrene-block-4-methoxystyrene) (PSnS-PMOST) synthesized by reversible addition–fragmentation chain transfer polymerization form lamellar domains with periodicities ranging from 18 to 34 nm. Thin film orientation control was achieved by thermal annealing between a neutral surface treatment and a top coat. Incorporation of tin into one block facilitates pattern transfer into SiO_2 via a two-step etch process utilizing oxidative and fluorine-based etch chemistries

Scattering of long wavelengths into thin silicon photovoltaic films by plasmonic silver nanoparticles

Nanoparticles and nanostructures with plasmonic resonances are currently being employed to enhance the efficiency of solar cells. Ag stripe arrays have been shown theoretically to enhance the short-circuit current of thin silicon layers. Monolayers of Ag nanoparticles with diameter d < 300 nm have shown strong plasmonic resonances when coated in thin polymer layers with thicknesses < d. We study experimentally the diffuse vs. specular scattering from monolayer arrays of Ag nanoparticles (spheres and prisms with diameters in the range 50 – 300 nm) coated onto the front side of thin (100 nm < t < 500 nm) silicon films deposited on glass and flexible polymer substrates, the latter originating in a roll-to-roll manufacturing process. Ag nanoparticles are held in place and aggregation is prevented with a polymer overcoat. We observe interesting wavelength shifts between maxima in specular and diffuse scattering that depend on particle size and shape, indicating that the nanoparticles substantially modify the scattering into the thin silicon film.United States. Air Force (United States. Army. Natick Soldier Research Development and Engineering Center Contract FA8721-05-C-0002)Massachusetts Institute of Technology. Institute for Soldier Nanotechnologies (Contract W911NF-07-D0004

Organic matter composition and heterotrophic bacterial activity at declining summer sea ice in the central Arctic Ocean

The Arctic Ocean is highly susceptible to climate change as evidenced by rapid warming and the drastic loss of sea ice during summer. The consequences of these environmental changes for the microbial cycling of organic matter are largely unexplored. Here, we investigated the distribution and composition of dissolved organic matter (DOM) along with heterotrophic bacterial activity in seawater and sea ice of the Eurasian Basin at the time of the record ice minimum in 2012. Bacteria in seawater were highly responsive to fresh organic matter and remineralized on average 55% of primary production in the upper mixed layer. Correlation analysis showed that the accumulation of dissolved combined carbohydrates (DCCHO) and dissolved amino acids (DAA), two major components of fresh organic matter, was related to the drawdown of nitrate. Nitrate‐depleted surface waters at stations adjacent to the Laptev Sea showed about 25% higher concentrations of DAA than stations adjacent to the Barents Sea and in the central Arctic basin. Carbohydrate concentration was the best predictor of heterotrophic bacterial activity in sea ice. In contrast, variability in sea‐ice bacterial biomass was largely driven by differences in ice thickness. This decoupling of bacterial biomass and activity may mitigate the negative effects of biomass loss due to ice melting on heterotrophic bacterial functions. Overall, our results reveal that changes in DOM production and inventories induced by sea‐ice loss have a high potential to enhance the bacterial remineralization of organic matter in seawater and sea ice of the Arctic Ocean

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

Polyploidy is an evolutionary innovation for many animals and all flowering plants, but its impact on selection and domestication remains elusive. Here we analyze genome evolution and diversification for all five allopolyploid cotton species, including economically important Upland and Pima cottons. Although these polyploid genomes are conserved in gene content and synteny, they have diversified by subgenomic transposon exchanges that equilibrate genome size, evolutionary rate heterogeneities and positive selection between homoeologs within and among lineages. These differential evolutionary trajectories are accompanied by gene-family diversification and homoeolog expression divergence among polyploid lineages. Selection and domestication drive parallel gene expression similarities in fibers of two cultivated cottons, involving coexpression networks and N6-methyladenosine RNA modifications. Furthermore, polyploidy induces recombination suppression, which correlates with altered epigenetic landscapes and can be overcome by wild introgression. These genomic insights will empower efforts to manipulate genetic recombination and modify epigenetic landscapes and target genes for crop improvement

Structure-Function Analysis of Human TYW2 Enzyme Required for the Biosynthesis of a Highly Modified Wybutosine (yW) Base in Phenylalanine-tRNA

Posttranscriptional modifications are critical for structure and function of tRNAs. Wybutosine (yW) and its derivatives are hyper-modified guanosines found at the position 37 of eukaryotic and archaeal tRNAPhe. TYW2 is an enzyme that catalyzes α-amino-α-carboxypropyl transfer activity at the third step of yW biogenesis. Using complementation of a ΔTYW2 strain, we demonstrate here that human TYW2 (hTYW2) is active in yeast and can synthesize the yW of yeast tRNAPhe. Structure-guided analysis identified several conserved residues in hTYW2 that interact with S-adenosyl-methionine (AdoMet), and mutation studies revealed that K225 and E265 are critical residues for the enzymatic activity. We previously reported that the human TYW2 is overexpressed in breast cancer. However, no difference in the tRNAPhe modification status was observed in either normal mouse tissue or a mouse tumor model that overexpresses Tyw2, indicating that hTYW2 may have a role in tumorigenesis unrelated to yW biogenesis