Paleogene time scale miscalibration: Evidence from the dating of the North Atlantic igneous province

Jolley et al. (2002) have proposed that the date of the Paleocene - Eocene thermal maximum is ca. 60 Ma, at least 5 m.y. older than currently estimated and, as a result, argue that the Paleogene time scale of Berggren et al. (1995) is grossly miscalibrated. The implications of this proposal are implausible, and we attribute the discrepancy in age noted by Jolley et al. (2002) to miscorrelation of the Staffa-type palynofloras and ambiguous isotopic dates from the North Atlantic igneous province

The Geology of Ukhaa Tolgod (Djadokhta Formation, Upper Cretaceous, Nemegt Basin, Mongolia)

The lithostratigrahy and sedimentology of the fossiliferous Upper Cretaceous strata exposed in the Gobi Desert of Mongolia at Ukhaa Tolgod are described and mapped on aerial photos. Topographic features are also mapped by plane table and alidade. Five lithologic and sedimentologic facies are described: E-1, distinctly cross-stratified sandstone with fine structure, interpreted to represent eolian dune deposits; E-2, vaguely bedded sandstone with cross-stratified concretionary sheets, interpreted to represent eolian dune deposits modified by diagenetic formation of slope-parallel concretionary sheets of pedogenic calcite; S, structureless sandstone lacking concretions or cross-strata, interpreted to represent sandslide deposits generated by mass wasting along the lee slopes; C, conglomerate interpreted to represent basin-margin conglomerates washed into the dune field from adjacent topographic highs; and M, mudstone and siltstone interpreted to represent interdune deposition in ephemeral ponds and lakes. Facies E-2 and S have not been reported previously. Eleven stratigraphic sections at various localities within the Ukhaa Tolgod drainage basin are documented. The exposed composite section consists of about 75 m of pale orange sandstones, greenish-brown conglomerates, and brown siltstones that are products of an arid environment. Four schematic cross sections are documented to illustrate the lateral relationships among the five facies. In the Ukhaa Tolgod area, the beds dip about 2.5u to the south, away from the nearby Gilbent Range. This structural attitude is interpreted to be related to the uplift of the Gilbent block along normal faults exposed at the base of the range. The dune-derived sandslides of Facies S contain a rich skeletal fauna of Late Cretaceous dinosaurs, mammals, and lizards. Essentially, all the skeletal remains collected at Ukhaa Tolgod come from Facies S. Facies E-1 does contain numerous, concave-up depressions in the cross-strata interpreted as vertebrate tracks. Facies E-2 contains abundant cylindrical structures interpreted as burrows. The strata at Ukhaa Tolgod are referred to the Djadokhta Formation. As seen in the Bayn Dzak Member at Bayn Dzak, facies E-1, E-2, S, and M dominate the lower part of the section at Ukhaa Tolgod, with prominent beds of Facies C exposed near the top. Accordingly, the exposures at Ukhaa Tolgod are referred to the Bayn Dzak Member of the Djadokhta Formation. Classic exposures of the Barun Goyot Formation at Khulsan differ in having units of flat-bedded sandstone intercalated with beds of Facies S near the top of the section. To date, over 1,000 vertebrate skulls and skeletons have been collected from Facies S. Most are preserved as float contained in small calcareous nodules; however, some were found in situ. Many specimens represent either fairly complete skulls or skulls with articulated or associated postcranial skeletons. Based on faunal similarities between Bayn Dzak and Ukhaa Tolgod, the fauna at Ukhaa Tolgod is interpreted to reflect a Campanian age. The rich assemblage of fossils makes Ukhaa Tolgod one of the richest Late Cretaceous vertebrate fossil localities in the world, and the fossils provide unique insights into evolutionary developments of mammals, lizards, and dinosaurs, including birds, less than 10 my before the terminal Cretaceous extinction event

Toward a Revised Paleogene Geochronology

New information has become available that requires a revision of Paleogene chronology incorporated in most current Cenozoic time scales. Age estimates for the limits of the Paleogene (the Oligocene/Miocene and Cretaceous/Paleogene boundaries) have not changed appreciably and remain at about 24 Ma and about 66 Ma, respectively. However, new radioisotope data indicate that boundaries of subdivisions within the Paleogene are generally younger than previously estimated, for example, the Paleocene/Eocene and Eocene/Oligocene, by about 2 to 3 m.y. We review the current status of magnetobiostratigraphic correlations and new radioisotope data, with particular reference to late Eocene~early Oligocene geochronology and provide a reassessment of the age of the Eocene/Oligocene boundary as 34 Ma. We anticipate that with concurrent work on a fundamental revision of the geomagnetic polarity sequence, a comprehensive and detailed new time scale for the Cenozoic will soon be developed

Sauropod embryo-bearing rocks

11 p. : ill. (some col.), map ; 26 cm.Includes bibliographical references (p. 10-11).The stratigraphy and age of a sauropod nesting ground containing the first definitive embryonic remains of sauropods preserved inside their eggs is analyzed. The fossil locality, called Auca Mahuevo, occurs in the Anacleto Member of the Río Colorado Formation in Neuquén Province, Argentina. The 5 m thick interval of overbank mudstones containing the fossilized eggs and embryos occurs near the middle of a 35 m sequence of thin, fluvial, concretionary sandstones and thicker units of silty sandstone. Flooding of shallow stream channels deposited overbank silt and mud on the eggs, killing the embryos and initiating the process of fossilization. Egg fragments containing patches of fossilized integument were found as float weathering out of the mudstone on local flats. Complete eggs containing embryonic bones and teeth were quarried from a steep ridge where the mudstone was exposed. Twelve paleomagnetic samples collected throughout the lower 30 m of the section establish the presence of a Reverse geomagnetic polarity interval. This constitutes the first magnetostratigraphic characterization for this part of the Río Colorado Formation and for the late Cretaceous sequence of formations that comprise the Neuquén Group. Biochronologic age estimates for the Río Colorado fauna combined with the Reverse polarity determinations for the fossiliferous sediments in the Anacleto Member argue for an age younger than the long Cretaceous C34 Normal, which ends at the upper boundary of the Sartonian and older than the late Campanian. The Reverse interval containing the fossils at Auca Mahuevo is therefore considered to be early or middle Campanian in age, most likely correlative with C33R between 83.5 and 79.5 Ma

A robust SNP-haplotype assay for Bct gene region conferring resistance to beet curly top virus in common bean (Phaseolus vulgaris L.)

Beet curly top virus (BCTV), which is synonymous with curly top virus (CTV), causes significant yield loss in common bean (snap and dry beans) cultivars and several other important crops. Common bean cultivars have been found to be resistant to CTV, but screening for resistance is challenging due to the cyclical nature of epidemics and spotty feeding by the leafhopper that vectors the virus. We used an SNP dataset for the Snap Bean Association Panel (SnAP) agro-inoculated with CTV-Logan (CA/Logan) strain to locate the Bct gene region to a 1.7-Mb interval on chromosome Pv07 using genome-wide association study (GWAS) analysis. Recombinant lines from the SnAP were used to further narrow the Bct region to a 58.0-kb interval. A missense SNP (S07_2970381) in candidate gene Phvul.007G036300 Exonuclease V (EXO5) was identified as the most likely causal mutation, and it was the most significant SNP detected by GWAS in a dry bean population (DBP) naturally infected by the CTV-Worland (Wor) strain. Tm-shift assay markers developed for SNP S07_2970381 and two linked SNPs, S07_2970276 and S07_2966197, were useful for tracking different origins of the Bct EXO5 candidate gene resistance to CTV in common bean. The three SNPs identified four haplotypes, with haplotype 3-1 (Haplo3-1) of Middle American origin associated with the highest levels of CTV resistance. This SNP-haplotype assay will enable breeders to track resistance sources and to develop cultivars with better CTV resistance

The Age of the 20 Meter Solo River Terrace, Java, Indonesia and the Survival of Homo erectus in Asia

Homo erectus was the first human lineage to disperse widely throughout the Old World, the only hominin in Asia through much of the Pleistocene, and was likely ancestral to H. sapiens. The demise of this taxon remains obscure because of uncertainties regarding the geological age of its youngest populations. In 1996, some of us co-published electron spin resonance (ESR) and uranium series (U-series) results indicating an age as young as 35–50 ka for the late H. erectus sites of Ngandong and Sambungmacan and the faunal site of Jigar (Indonesia). If correct, these ages favor an African origin for recent humans who would overlap with H. erectus in time and space. Here, we report 40Ar/39Ar incremental heating analyses and new ESR/U-series age estimates from the “20 m terrace" at Ngandong and Jigar. Both data sets are internally consistent and provide no evidence for reworking, yet they are inconsistent with one another. The 40Ar/39Ar analyses give an average age of 546±12 ka (sd±5 se) for both sites, the first reliable radiometric indications of a middle Pleistocene component for the terrace. Given the technical accuracy and consistency of the analyses, the argon ages represent either the actual age or the maximum age for the terrace and are significantly older than previous estimates. Most of the ESR/U-series results are older as well, but the oldest that meets all modeling criteria is 143 ka+20/−17. Most samples indicated leaching of uranium and likely represent either the actual or the minimum age of the terrace. Given known sources of error, the U-series results could be consistent with a middle Pleistocene age. However, the ESR and 40Ar/39Ar ages preclude one another. Regardless, the age of the sites and hominins is at least bracketed between these estimates and is older than currently accepted

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

This integrated, multiplatform PanCancer Atlas study co-mapped and identified distinguishing molecular features of squamous cell carcinomas (SCCs) from five sites associated with smokin

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

Long noncoding RNAs (lncRNAs) are commonly dys-regulated in tumors, but only a handful are known toplay pathophysiological roles in cancer. We inferredlncRNAs that dysregulate cancer pathways, onco-genes, and tumor suppressors (cancer genes) bymodeling their effects on the activity of transcriptionfactors, RNA-binding proteins, and microRNAs in5,185 TCGA tumors and 1,019 ENCODE assays.Our predictions included hundreds of candidateonco- and tumor-suppressor lncRNAs (cancerlncRNAs) whose somatic alterations account for thedysregulation of dozens of cancer genes and path-ways in each of 14 tumor contexts. To demonstrateproof of concept, we showed that perturbations tar-geting OIP5-AS1 (an inferred tumor suppressor) andTUG1 and WT1-AS (inferred onco-lncRNAs) dysre-gulated cancer genes and altered proliferation ofbreast and gynecologic cancer cells. Our analysis in-dicates that, although most lncRNAs are dysregu-lated in a tumor-specific manner, some, includingOIP5-AS1, TUG1, NEAT1, MEG3, and TSIX, synergis-tically dysregulate cancer pathways in multiple tumorcontexts

Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas

Although theMYConcogene has been implicated incancer, a systematic assessment of alterations ofMYC, related transcription factors, and co-regulatoryproteins, forming the proximal MYC network (PMN),across human cancers is lacking. Using computa-tional approaches, we define genomic and proteo-mic features associated with MYC and the PMNacross the 33 cancers of The Cancer Genome Atlas.Pan-cancer, 28% of all samples had at least one ofthe MYC paralogs amplified. In contrast, the MYCantagonists MGA and MNT were the most frequentlymutated or deleted members, proposing a roleas tumor suppressors.MYCalterations were mutu-ally exclusive withPIK3CA,PTEN,APC,orBRAFalterations, suggesting that MYC is a distinct onco-genic driver. Expression analysis revealed MYC-associated pathways in tumor subtypes, such asimmune response and growth factor signaling; chro-matin, translation, and DNA replication/repair wereconserved pan-cancer. This analysis reveals insightsinto MYC biology and is a reference for biomarkersand therapeutics for cancers with alterations ofMYC or the PMN