Genetic diversity of Colombian sheep by microsatellite markers

RESUMEN: In Colombia the sheep production systems are managed under extensive conditions and mainly correspond to peasant production systems so their genetic management has led to increased homozygosity and hence productivity loss. The aim of this study was to determine the genetic diversity in 549 individuals corresponding to 13 sheep breeds in Colombia, using a panel of 11 microsatellite molecular markers. One hundred and fifty seven alleles were found (average of 14.27 alleles/locus), with a range of observed and expected heterozygosity from 0.44 to 0.84 and 0.67 to 0.86, respectively. Thirty-three of 143 Hardy Weinberg tests performed showed significant deviations (p < 0.05) due to a general lack of heterozygous individuals. The Fis ranged from 0.01 in Corriedale to 0.15 for the Persian Black Head breed, suggesting that there are presenting low to moderate levels of inbreeding. Overall, Colombian sheep showed high levels of genetic diversity which is very important for future selection and animalbreeding programs

Inbreeding in animal production

ABSTRACT: We made a literalature review about advantages and disadvantages of using inbreeding (crossing of related individuals) directly or indirectly in animal production. The inbreeding acts in wild and domesticated animal populations reducing genetic variability, decreasing heterozygosity, and increasing the chance to inherit alleles associated with genetic defects, resulting in a reduction of the animal adaptation capacity to the environment and increasing the risk of extinction. Also has been demonstrated that inbreeding increase is associated with the average reduction of one or more economic interest characteristics in animalproduction. For this reason in conservation and breeding programs is very important have control over inbreeding to maintain the genetic variability within animal populations over time. Key words: Heterozygosity, animal breeding, selection, genetic variability. Keywords: Heterozygosity, animal breeding, selection, genetic variability.RESUMEN: Se realizó una revisión literaria acerca de las ventajas y desventajas de utilizar la endogamia (cruce de individuos emparentados) directa o indirectamente en los sistemas de producción animal. La endogamia actúa en las poblaciones de animales silvestres y domesticadas reduciendo la variabilidad genética dentro de las poblaciones, disminuyendo la heterocigocidad, y aumentando la probabilidad de heredar a las siguientes generaciones alelos asociados a defectos genéticos, lo que se traduce finalmente en una reducción en la capacidad de adaptación de los animales al medio ambiente y un aumento en el riesgo de extinción. También se ha demostrado que el aumento de la endogamia a menudo se asocia con una reducción en el valor promedio de una o más características de interés económico en la producción animal. Es por esto que en los programas de mejoramiento genético y conservación es de vital importancia tener control sobre la endogamia para mantener la variabilidad genética dentro de las poblaciones animales. Palabras clave: Heterocigocidad, mejoramiento genético, selección, variabilidad genética

Caracterización genética de ovinos criollos colombianos

ABSTRACT: indigenous breeds are important for poor farmers because of their natural selection against harsh environments and adaptation to regional conditions. However, inbreeding of indigenous sheep populations has increased in Colombia due to indiscriminate cross-breeding with foreign animals and lack of reproductive controls, with subsequent loss in productivity, which poses a great risk for the conservation of valuable genes. Objective: to determine the genetic diversity in Colombian indigenous sheep by using a panel of 10 microsatellite molecular markers. Methods: blood samples from 362 individuals from 43 farms in 11 Colombian provinces were genotyped and analyzed for a panel of 10 microsatellite markers. Results: a total of 134 alleles were found (13.4 alleles/locus on average) with a range of observed and expected heterozygosity of 0.428 to 0.831 and 0.615 to 0.855, respectively, and 0.742 polymorphic information content (PIC). The average Wright F-statistics (FIS ) of the breeds was 0.107, suggesting moderate levels of inbreeding. Colombian sheep showed a low level of genetic differentiation among breeds (FST = 0.054) and STRUCTURE analysis showed complex patterns of admixture in the breeds. Conclusion: overall, Colombian sheep have high genetic variability, which is very important for future conservation programs and genetic improvement.RESUMEN: las razas animales autóctonas son importantes para los agricultores de escasos recursos a causa de su selección natural contra el duro ambiente y su adaptación a condiciones regionales. Sin embargo en Colombia, debido al cruce indiscriminado con razas foráneas y a la falta de control de la reproducción, ha aumentado la consanguinidad en las poblaciones de ovinos criollos y por lo tanto la pérdida en la productividad, lo que supone un gran riesgo para la conservación de genes valiosos. Objetivo: determinar la diversidad genética en razas criollas de ovinos colombianos utilizando análisis por microsatélites. Métodos: se visitaron 43 granjas localizadas en 11 departamentos del país, en las cuales se tomaron muestras de sangre a 362 individuos. Las muestras fueron genotipadas y analizadas para un panel de 10 marcadores microsatélites. Resultados: un total de 134 alelos fueron encontrados (13,4 alelos/locus en promedio), con un rango de heterocigocidad observada y esperada de 0,428 a 0,831 y 0,615 a 0,855, respectivamente, y un contenido de información polimórfica (PIC) promedio de 0,742. El Wright F-statistics (FIS) promedio de las razas evaluadas fue 0,107, lo cual sugiere que las razas tienen niveles moderados de consanguinidad. Las ovejas colombianas presentaron un bajo grado de diferenciación genética entre las distintas razas (FST = 0,054) y el análisis de STRUCTURE mostro complejos patrones de mezcla en las razas estudiadas. Conclusión: en términos generales, las ovejas colombianas presentan una alta variabilidad genética lo cual es muy importante para futuros programas de conservacion y mejoramiento genetico

Análisis de la diversidad genética del búfalo en Colombia

ABSTRACT: Estimates of genetic diversity provide useful information on the genetic structure of animal populations, useful for the design of improvement strategies to impact traits of economic interest. They can also be used for implementing conservation and restoration policies regarding the sustainable use of genetic resources. The aim of this study was to characterize the genetic structure of buffalo population (Bubalus bubalis) in the most representative Colombian provinces by using 10 microsatellite markers. A total of 588 individuals were sampled from 12 buffalo herds. The MGTG7 and ETH225 microsatellites were monomorphic. Eighty seven alleles were observed for all the loci. The average number of alleles was 10.9 ± 3.6 and the effective average number of alleles was 3.9 ± 1.4. The PIC values ranged between 0.5 and 0.8, and the probability of exclusion over all loci was over 99.99%. The highest value for the Ho population was 0.68, and the lowest was 0.60. The GST value for the total loci was 0.062, indicating a very low level of genetic structure among subpopulations. Values for genetic distance between populations and racial groups were very low, suggesting there is still a genetic mix within buffalo herds in the analyzed population.RESUMEN: Las estimaciones de diversidad genética del búfalo en Colombia proveen información útil para conocer su estructura genética, diseñar programas de cría y mejoramiento genético para características de interés económico, e implementar políticas de conservación para la utilización sostenible y restauración de los recursos genéticos. El objetivo de este estudio fue caracterizar y determinar la estructura genética de la población bufalina (Bubalus bubalis) en las provincias (Departamentos) Colombianos más representativos, por medio de 10 marcadores microsatélites. Se muestrearon 588 individuos de 12 hatos bufalinos de Colombia. Los microsatélites ETH225 y MGTG7 fueron monomórficos. Se observó un total de 87 alelos para el total de los loci, el número de alelos observados promedio fue de 10.9 ± 3.6 y el número efectivo de alelos promedio fue de 3.9 ± 1.4. Los valores de PIC variaron entre 0.5 y 0.8, y la probabilidad de exclusión sobre todos los loci fue superior al 99.99%. El valor más alto de Ho por población fue de 0.68 y el más bajo 0.60. El valor promedio de GST para el total de los loci en la población total de búfalos fue de 0.062, indicando un grado muy bajo de estructura genética entre las subpoblaciones. Los valores de distancia genética fueron muy bajos entre poblaciones y entre grupos raciales, lo cual indica que aún existe una alta mezcla genética en los hatos bufalinos en Colombia

Genómica en la producción animal

Genetic improvement evaluates and uses genetic variation to maintain and improve quality and quantity of animal production. The identification of high genetic merit animals is complicated by the fact that most traits of economic importance, being quantitative in nature, has controlled continuous variations which several genes interact with the environment. The aim of this paper was to review on the application of genomics in animal production for different characteristics associated with both milk and meat production and the current availability of tools of molecular genetics and genomics to predict more precision breeding values of animals from birth, decreasing the generation interval and increasing the intensity of selection.El mejoramiento genético evalúa y utiliza la variación genética para mantener y mejorar cualitativa y cuantitativamente la producción animal. La identificación de animales con altos méritos genéticos se dificulta por el hecho que la mayoría de las características de importancia económica, por ser de naturaleza cuantitativa, son controladas por varios genes los cuales interactúan con el medio ambiente. El objetivo de este documento fue realizar una revisión sobre la aplicación de la genómica en la producción animal para diferentes características tanto las asociadas a la producción de leche como carne y la disponibilidad actual de herramientas de genética molecular y genómica que permiten predecir con mayor precisión los valores genéticos de los animales desde su nacimiento, disminuyendo el intervalo entre generaciones y aumentando la intensidad de selección

Konvencionalna i funkcionalna procjena sjemena mužjaka mliječnih koza

Evaluating the reproductive indicators in sheep breeding in Colombia, particularly males, is essential to achieve optimal production parameters. This study aimed to evaluate the semen quality of male goats through both conventional and functional seminal analysis. Semen samples from eight goats were collected and conventional (volume, appearance, colour, motility, vigour, and morphology) and functional (plasma membrane integrity, mitochondrial membrane potential, DNA integrity, lipid peroxidation, and reactive oxygen species production) seminal parameters were evaluated. The results showed an average scrotal circumference of 25.69 cm, seminal volume of 0.51 mL, and concentration of 1936 x 106 sperm/mL. The average individual motility was 63.37%, vigour was four, and the percentage of abnormalities was 7.75%. Individual motility was correlated with the mitochondrial membrane potential (r=0.840, P=0.009) and reactive oxygen species production (r=-0.91, P=0.001). The average of cells with high mitochondrial membrane potential was 52.94%, while 39.29% were necrotic cells, the DNA fragmentation index average was 12.5%, reactive oxygen species production was 38.68%, lipoperoxidation analysis was 7.33% on average, and the integrity of the membrane was 54.77%. The results establish the parameters for the semen from Antioquia goats and confirm that goat semen is of good quality and could be used during artificial insemination programs.Procjena reproduktivnih indikatora u stadima koza u Kolumbiji fokusirana je na mužjake i od osnovne je važnosti za postizanje optimalnih produktivnih parametara. Cilj je ove studije bio ocijeniti kvalitetu sjemena jaraca kroz konvencionalnu i funkcionalnu analizu sjemena. Prikupljeni su uzorci sjemena osam jaraca te su procijenjeni konvencionalni (volumen, izgled, boja, pokretljivost, vitalnost i morfologija) i funkcionalni (integritet stanične membrane, potencijal mitohondrijske membrane, integritet DNK, peroksidacija lipida i proizvodnja reaktivnih spojeva kisika) parametri. Rezultati su pokazali prosječni opseg skrotuma od 25,69 cm, 0,51 mL za volumen sjemena, 1936 x 106 spermija/mL za koncentraciju. Prosječna pojedinačna pokretljivost bila je 63,37 %, vitalnost je bila četiri, a postotak abnormalnosti bio je 7,75 %. Pojedinačna pokretljivost povezana je s potencijalom mitohondrijske membrane (r=0,840, P=0,009) i proizvodnjom reaktivnih spojeva kisika (r=-0,91, P=0,001). Prosjek stanica s visokim potencijalom mitohondrijske membrane bio je 52,94 %, dok je bilo 39,29 % nekrotičnih stanica, prosječni indeks fragmentacije DNK bio je 12,5 %, proizvodnja reaktivnih spojeva kisika bila je 38,68 %, analiza lipoperoksidacije bila je u prosjeku 7,33 %, a integritet membrane 54,77 %. Rezultati utvrđuju parametre za sjeme antioquia koza i potvrđuje da sjeme jaraca predstavlja dobru kvalitetu i moglo bi se koristiti u programima umjetne oplodnje

Kvaliteta sjemena u ovaca

Reproductive evaluation, the selection of individual breeders, and reproductive biotechnologies are important tools in developing productive and reproductive rates. When choosing a male as a breeding future, determining its general health status and genotypic and phenotypic superiority are necessary. This study evaluated the conventional and functional seminal quality in ovine males. The semen of eleven ovines of different pure races was collected by electroejaculation. The following average values were observed for each conventional parameter: scrotal circumference (CE, 34.3 cm), seminal volume (vol, 1.63 mL), concentration (C, 768.4 x 106/mL), individual motility (MI, 80%), masal motility (MM, 4) and vigor (Vi, 3.7). On the other hand, functional analysis showed plasma membrane integrity (PMI) of 45.7%, mitochondrial membrane potential (MMP) of 38.5%, DNA fragmentation index (DFI) of 17.0%, lipoperoxidation of the membrane (LPO) of 32.7%, and the production of reactive oxygen species (ROS) of 28.56%. Additionally, a high and positive correlation was found for variables concerning seminal quality: Vi and MM, Vi and MI, MMP and MM, MMP and MI, PMI and MMP, as well as ROS and MMP. In contrast, two strongly negative correlations were obtained (C vs. Vol and LPO vs. CE). These are the first estimates of functional seminal quality evaluation of sheep in Colombia. In addition, this study provides a baseline for conventional and functional seminal parameters in the region.Reproduktivna procjena, odabir pojedinačnih rasplodnih mužjaka i reproduktivne biotehnologije važni su alati u unaprjeđenju produktivnih i reproduktivnih stopa. Pri odabiru mužjaka za rasplod, potrebno je određivanje općeg zdravstvenog statusa te genotipske i fenotipske superiornosti. Ovaj rad procjenjuje konvencionalnu i funkcionalnu kvalitetu sjemena u ovnova. Sjeme jedanaest ovnova različitih čistokrvnih pasmina prikupljeno je elektroejakulacijom. Zamijećene su sljedeće prosječne vrijednosti za svaki konvencionalni parametar: opseg skrotuma (CE, 34,3 cm), volumen sjemena (vol, 1,63 mL), koncentracija (C, 768,4 x 106/mL), pojedinačna pokretljivost (MI, 80 %), ukupna pokretljivost (MM, 4) i vitalnost (Vi, 3,7). S druge strane, funkcionalna analiza pokazala je integritet stanične membrane (PMI) od 45,7 %, potencijal mitohondrijske membrane (MMP) od 38,5 %, indeks fragmentacije DNK (DFI) od 17,0%, lipoperoksidaciju membrane (LPO) od 32,7 % i proizvodnju reaktivnih kisikovih spojeva (ROS) od 28,56 %. Uz to je otkrivena i visoka i pozitivna korelacija za varijable o kvaliteti sjemena: Vi i MM, Vi i MI, MMP i MM, MMP i MI, PMI i MMP, kao i ROS i MMP. Suprotno tome, dobivene su dvije vrlo negativne korelacije (C nasuprot Vol i LPO nasuprot CE). To su prve procjene ocjenjivanja funkcionalne kvalitete sjemena ovaca u Kolumbiji. Uz to, ova studija osigurava početnu vrijednost za sve konvencionalne i funkcionalne parametre sjemena u regiji

Comparative study of compositional and nutritional parameters in cow, goat and buffalo milk, Antioquia, Colombia

ABSTRACT: Milk is a fluid secreted by females of all species of mammals, which is used mainly to supply the nutritional needs of the newborn calf. It is an important source of carbohydrates, lipids, proteins, vitamins and minerals. Throughout history many countries have characterized the composition and nutritional quality of many mammals species milk, especially those that have been domesticated. However in Colombia there is insufficient information with respect to milk produced by different species to the cow. The aim of this study was to determine the composition and evaluate the nutritional quality of cow, goat and buffalo milk. Buffalo milk showed higher values in for parameters such as protein (4,07%), fat (7,23%), lactose (5,06%), total solids (16,81%) and solids non-fat (9,91%) than goat and cow milk, making it an excellent alternative for the production and processing of milk products. On the other hand goat milk had the highest content of polyunsaturated fat (0.1298 g/100g) compared to cow milk and buffalo milk, which makes it more digestible and healthy for human consumption. All this led to the conclusion that each of these milk types has particular characteristics that make them more or less digestible and suitable for the manufacture of dairy products, which determines the advantages and disadvantages of each of the species.RESUMEN: La leche es un líquido secretado por las hembras de todas las especies de mamíferos, la cual es utilizada principalmente para satisfacer las necesidades nutricionales de la cría recién nacida. Es una fuente importante de carbohidratos, lípidos, proteínas, vitaminas y minerales. A lo largo de la historia en varios países se ha caracterizado la composición y calidad nutricional de la leche de numerosas especies de mamíferos, especialmente las que han sido domesticadas. Sin embargo en Colombia no hay suficiente información en lo que respecta a leches producidas por especies no vacunas. El objetivo del presente estudio fue determinar la composición y evaluar la calidad nutricional de las leches de vaca, cabra y búfalo. La leche de búfala presentó valores más altos para parámetros tales como la proteína (4,07%), grasa (7,23%), lactosa (5,06%), solidos totales (16,81%) y solidos no grasos (9,91%) que las leches de cabra y vaca, lo cual la convierte en una excelente alternativa para la producción y transformación de productos. De otro lado la leche de cabra presento el mayor contenido de grasa poliinsaturada (0,1298 g/100g) comparadas con las leches de vaca y búfala, lo que la hace más digestible y saludable para el consumo humano. Todo lo anterior llevó a la conclusión de que cada uno de estos tipos de leche tiene características particulares que las hacen más o menos digestibles y adecuadas para la fabricación de productos lácteos, lo cual determina las ventajas y desventajas de cada una de las especies