On the dynamics of magnetic fluids in magnetic resonance imaging

Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2008.Includes bibliographical references (p. 219-233).The hydrodynamics of magnetic fluids, often termed ferrofluids, has been an active area of research since the mid 1960s. However, it is only in the past twenty years that these fluids have begun to be used in magnetic resonance imaging (MRI) where they have found application as contrast agents, improving the contrast to noise ratio of the received MR intensity. The major goal of this work was to assess the feasibility of modulating the signal intensity in MRI in regions near superparamagnetic iron oxide contrast agents by applying a rotating magnetic field. Analytical study and numerical simulations of the effects of such a rotating magnetic field are presented. Simulated variations in fluid magnetization are achieved by changing the frequency of the rotating magnetic field. A linearization of the equilibrium magnetization Langevin relation results in a small signal magnetic susceptibility tensor that can be used to influence fluid flow. The feasibility of the approach under the real-life constraints of MR imaging are assessed. Also examined is the potential for coupling changes in magnetization due to rotating fields with hypothermia treatment of cancerous tissue. In addition to theoretical and simulated analysis, considerable experimental work was undertaken at the MRI systems of the HST Athinoula A. Martinos Center for Biomedical Imaging at Massachusetts General Hospital, Charlestown, Massachusetts. This work evaluated the passive behavior of both commercial ferrofluids and MRI contrast agents. The ability of MRI to serve as a highly accurate indicator of the fluid's physical and magnetic properties is shown. The thesis represents the first investigation into the use of the hydrodynamic properties of magnetic fluid in the presence of a rotating field as a mechanism for contrast in MRI. The results show the possibility of varying MR image intensity under careful selection of field conditions.by Pádraig J. Cantillon-Murphy.Ph.D

Electromagnetic tracking using modular, tiled field generators

Electromagnetic tracking (EMT) systems play an important role in medicine, robotics, and virtual reality applications by providing accurate position and orientation referencing within a fixed volume around a magnetic field generator. Advances in sensor technology provide increasingly small, lightweight sensors capable of being integrated into hand-held devices for medical simulation, gaming, and image-guided surgery. The need for customizable tracking volumes becomes of interest as the uptake of EMT technology increases. This paper proposes a new method of creating custom tracking volumes from multiple planar field generators. A monolithic, low-cost printed circuit board design allows for tiling of multiple generators to create a larger tracking volume. Experiments were performed with two generators at different angles. Successful tracking is demonstrated with increased positional accuracy observed when transmitters are inclined with respect to one another. Horizontal tiling configurations are most accurate when a common edge is shared between adjacent field generators

Planar body-mounted sensors for electromagnetic tracking

Electromagnetic tracking is a safe, reliable, and cost-effective method to track medical instruments in image-guided surgical navigation. However, patient motion and magnetic field distortions heavily impact the accuracy of tracked position and orientation. The use of redundant magnetic sensors can help to map and mitigate for patient movements and magnetic field distortions within the tracking region. We propose a planar inductive sensor design, printed on PCB and embedded into medical patches. The main advantage is the high repeatability and the cost benefit of using mass PCB manufacturing processes. The article presents new operative formulas for electromagnetic tracking of planar coils on the centimetre scale. The full magnetic analytical model is based on the mutual inductance between coils which can be approximated as being composed by straight conductive filaments. The full model is used to perform accurate system simulations and to assess the accuracy of faster simplified magnetic models, which are necessary to achieve real-time tracking in medical applications

Loss of flexion during bronchoscopy: a physical experiment and case study of commercially available systems

During routine endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) procedures, especially with biopsy of lymph nodes in or around the left upper lobe, frequent reports have noted the loss of ultrasound image and needle angulation leading to an inability to biopsy nodes visualised by EBUS. The aim of this research was to investigate and compare this loss of angulation with commercially available scopes. Bench-top experiments and a clinical case study demonstrated the varying loss of scope angulation, flexibility and manoeuvrability with different scopes and biopsy instruments leading to procedural implications. Improvements in both the EBUS scope and needle characteristics are required to overcome this limitation which has implications in bronchoscope navigation and the diagnostic yield of EBUS-TBNA

Electropermanent magnetic anchoring for surgery and endoscopy

The use of magnets for anchoring of instrumentation in minimally invasive surgery and endoscopy has become of increased interest in recent years. Permanent magnets have significant advantages over electromagnets for these applications; larger anchoring and retraction force for comparable size and volume without the need for any external power supply. However, permanent magnets represent a potential hazard in the operating field where inadvertent attraction to surgical instrumentation is often undesirable. The current work proposes an interesting hybrid approach which marries the high forces of permanent magnets with the control of electromagnetic technology including the ability to turn the magnet OFF when necessary. This is achieved through the use of an electropermanent magnet, which is designed for surgical retraction across the abdominal and gastric walls. Our electropermanent magnet, which is hand-held and does not require continuous power, is designed with a center lumen which may be used for trocar or needle insertion. The device in this application has been demonstrated successfully in the porcine model where coupling between an intraluminal ring magnet and our electropermanent magnet facilitated guided insertion of an 18 Fr Tuohy needle for guidewire placement. Subsequent investigations have demonstrated the ability to control the coupling distance of the system alleviating shortcomings with current methods of magnetic coupling due to variation in transabdominal wall thicknesses. With further refinement, the magnet may find application in the anchoring of endoscopic and surgical instrumentation for minimally invasive interventions in the gastrointestinal tract

Pre-clinical validation of virtual bronchoscopy using 3D Slicer

Lung cancer still represents the leading cause of cancer-related death, and the long-term survival rate remains low. Computed tomography (CT) is currently the most common imaging modality for lung diseases recognition. The purpose of this work was to develop a simple and easily accessible virtual bronchoscopy system to be coupled with a customized electromagnetic (EM) tracking system for navigation in the lung and which requires as little user interaction as possible, while maintaining high usability. The proposed method has been implemented as an extension to the open-source platform, 3D Slicer. It creates a virtual reconstruction of the airways starting from CT images for virtual navigation. It provides tools for pre-procedural planning and virtual navigation, and it has been optimized for use in combination with a of freedom EM tracking sensor. Performance of the algorithm has been evaluated in ex vivo and in vivo testing. During ex vivo testing, nine volunteer physicians tested the implemented algorithm to navigate three separate targets placed inside a breathing pig lung model. In general, the system proved easy to use and accurate in replicating the clinical setting and seemed to help choose the correct path without any previous experience or image analysis. Two separate animal studies confirmed technical feasibility and usability of the system. This work describes an easily accessible virtual bronchoscopy system for navigation in the lung. The system provides the user with a complete set of tools that facilitate navigation towards user-selected regions of interest. Results from ex vivo and in vivo studies showed that the system opens the way for potential future work with virtual navigation for safe and reliable airway disease diagnosis

Navigational bronchoscopy for early lung cancer: a road to therapy

Peripheral lung nodules remain challenging for accurate localization and diagnosis. Once identified, there are many strategies for diagnosis with heterogeneous risk benefit analysis. Traditional strategies such as conventional bronchoscopy have poor performance in locating and acquiring the required tissue. Similarly, while computerized-assisted transthoracic needle biopsy is currently the favored diagnostic procedure, it is associated with complications such as pneumothorax and hemorrhage. Video-assisted thoracoscopic and open surgical biopsies are invasive, require general anesthesia and are therefore not a first-line approach. New techniques such as ultrathin bronchoscopy and image-based guidance technologies are evolving to improve the diagnosis of peripheral lung lesions. Virtual bronchoscopy and electromagnetic navigation systems are novel technologies based on assisted-computerized tomography images that guide the bronchoscopist toward the target peripheral lesion. This article provides a comprehensive review of these emerging technologies

Optimizing parameters of an open-source airway segmentation algorithm using different CT images.

Background: Computed tomography (CT) helps physicians locate and diagnose pathological conditions. In some conditions, having an airway segmentation method which facilitates reconstruction of the airway from chest CT images can help hugely in the assessment of lung diseases. Many efforts have been made to develop airway segmentation algorithms, but methods are usually not optimized to be reliable across different CT scan parameters. Methods: In this paper, we present a simple and reliable semi-automatic algorithm which can segment tracheal and bronchial anatomy using the open-source 3D Slicer platform. The method is based on a region growing approach where trachea, right and left bronchi are cropped and segmented independently using three different thresholds. The algorithm and its parameters have been optimized to be efficient across different CT scan acquisition parameters. The performance of the proposed method has been evaluated on EXACT’09 cases and local clinical cases as well as on a breathing pig lung phantom using multiple scans and changing parameters. In particular, to investigate multiple scan parameters reconstruction kernel, radiation dose and slice thickness have been considered. Volume, branch count, branch length and leakage presence have been evaluated. A new method for leakage evaluation has been developed and correlation between segmentation metrics and CT acquisition parameters has been considered. Results: All the considered cases have been segmented successfully with good results in terms of leakage presence. Results on clinical data are comparable to other teams’ methods, as obtained by evaluation against the EXACT09 challenge, whereas results obtained from the phantom prove the reliability of the method across multiple CT platforms and acquisition parameters. As expected, slice thickness is the parameter affecting the results the most, whereas reconstruction kernel and radiation dose seem not to particularly affect airway segmentation. Conclusion: The system represents the first open-source airway segmentation platform. The quantitative evaluation approach presented represents the first repeatable system evaluation tool for like-for-like comparison between different airway segmentation platforms. Results suggest that the algorithm can be considered stable across multiple CT platforms and acquisition parameters and can be considered as a starting point for the development of a complete airway segmentation algorithm

Mechanical catheter navigation with electromagnetic tracking to peripheral airway targets

Lung cancer remains the single most deadly cancer in men and women due to low rates of early detection and treatment. Since non-small cell lung cancer usually starts in the outer airways, targeted minimally invasive biopsy which limits radiation exposure and avoids surgery is highly desirable. Current commercial solutions such as the superDimension (Medtronic Inc., Dublin, Ireland), and SpIN (Veran Medical, St. Louis, USA) systems rely on electromagnetic tracking for virtual navigation. However, clinical outcomes have been unconvincing due to poor accuracy, limitations in instrumentation and the lack of tracked catheters. This work proposes a novel mechanical catheter design with embedded electromagnetic tracking to facilitate tip-tracked navigation without the need for proprietary instruments or probe exchange. The catheter was used to reach peripheral airway targets by multiple users in pre-clinical studies