Directed transport as a mechanism for protein folding in vivo

We propose a model for protein folding in vivo based on a Brownian-ratchet mechanism in the multidimensional energy landscape space. The device is able to produce directed transport taking advantage of the assumed intrinsic asymmetric properties of the proteins and employing the consumption of energy provided by an external source. Through such a directed transport phenomenon, the polypeptide finds the native state starting from any initial state in the energy landscape with great efficacy and robustness, even in the presence of different type of obstacles. This model solves Levinthal's paradox without requiring biased transition probabilities but at the expense of opening the system to an external field.Comment: 16 pages, 7 figure

Plasticity of the Anemonia viridis microbiota in response to different levels of combined anthropogenic and environmental stresses

Despite their recognized primary importance, marine coastal ecosystems around the globe are currently under threat, being subject to continuous local and global anthropogenic stressors. In this frame, understanding the response of coastal habitat-forming species to multiple stressors and their resilience is fundamental for the sustainable management of coastal ecosystems. In the present study, to provide some glimpses in this direction, we explored the response of the Anemonia viridis-associated microbiota to the combined anthropogenic stressors, which typically affect touristic hotspots at Mediterranean coastal sites. To this aim, two case studies have been carried out, the first in the Riccione coastal site (Italy, Center Mediterranean) and the second at Cap de Creus (Spain, North-western Mediterranean), where the A. viridis microbiota was assessed under the conditions of both high and low anthropogenic pressure. According to our findings, the A. viridis microbiota showed a relevant degree of plasticity in response to combined anthropogenic and environmental stressors, with changes that also mirrored variations in the surrounding seawater, thus indicating a close connection with the environment, from which potential symbiotic partners are selected. However, this potentially adaptive process also has a limitation, as observed in the highly anthropogenic impact site of Cap de Creus, where A. viridis-associated microbiota appeared completely unstructured, as demonstrated by an increased dispersion according to the Anna Karenina principle. This raises the question about the resilience of the A. viridis-associated microbiota under combined climate and anthropogenic threats, as well as of the anthropogenic factors driving the observed dysbiosis changes

Ageing and recovering of glass RPC

The glass Resistive Plate Chambers efficiency before and after water vapour flushing have been studied. The efficiency has been observed to rapidly drop to the level of 30% after a few days. After few hours of ammonia flushing, a full recover of the device occurred. Surprisingly, further flushing with water vapour had no effect on the efficiency, suggesting a treatment before the use in an experiment and/or whenever the performance is poor. In this work experimental results on tests at high temperature (up to 55∘C), high rate (up to 100Hz/cm2) and ageing (up to 10mC/cm2) are reported

Performance of glass RPC with industrial silk-screen-printed electrodes

In this paper we describe the performance of several Glass RPCs, where the water-based graphite coating is replaced by a synthetic coating applied using the screen printing technique. As expected, the performance of the detectors is good and reproducible due to the accurate control of the coating resistivity value. The resistance of the coating to the action of mechanical and chemical agents permits an easy electrode cleaning and mounting with respect to the RPC coated with the graphite varnish. This coating, together with the use of float glass as electrode material, allows an industrial production, where the detector characteristics can be tailored as a function of the experiment requirements

Gut microbiome structure and adrenocortical activity in dogs with aggressive and phobic behavioral disorders

Accompanying human beings since the Paleolithic period, dogs has been recently regarded as a reliable model for the study of the gut microbiome connections with health and disease. In order to provide some glimpses on the connections between the gut microbiome layout and host behavior, we profiled the phylogenetic composition and structure of the canine gut microbiome of dogs with aggressive (n = 11), phobic (n = 13) and normal behavior (n = 18). Hormones\u2019 determination was made through Radio Immuno-Assay (RIA), and next generation sequencing of the V3\u2013V4 gene region of the bacterial 16S rRNA was employed to determine gut microbiome composition. Our results did not evidence any significant differences of hormonal levels between the three groups. According to our findings, aggressive behavioral disorder was found to be characterized by a peculiar gut microbiome structure, with high biodiversity and enrichment in generally subdominant bacterial genera (i.e. Catenibacterium and Megamonas). On the other hand, phobic dogs were enriched in Lactobacillus, a bacterial genus with known probiotic and psychobiotic properties. Although further studies are needed to validate our findings, our work supports the intriguing opportunity that different behavioral phenotypes in dogs may be associated with peculiar gut microbiome layouts, suggesting possible connections between the gut microbiome and the central nervous system and indicating the possible adoption of probiotic interventions aimed at restoring a balanced host-symbiont interplay for mitigating behavioral disorders

Geraniol Treatment for Irritable Bowel Syndrome: A Double-Blind Randomized Clinical Trial

Geraniol is an acyclic monoterpene alcohol with well-known anti-inflammatory and antimicrobial properties which has shown eubiotic activity towards gut microbiota (GM) in patients with irritable bowel syndrome (IBS). Methods: Fifty-six IBS patients diagnosed according to Rome III criteria were enrolled in an interventional, prospective, multicentric, randomized, double-blinded, placebo-controlled trial. In the treatment arm, patients received a low-absorbable geraniol food supplement (LAGS) once daily for four weeks. Results: Patients treated with LAGS showed a significant reduction in their IBS symptoms severity score (IBS-SSS) compared to the placebo (195 vs. 265, p = 0.001). The rate of responders according to IBS-SSS (reduction ≥ 50 points) was significantly higher in the geraniol vs placebo group (52.0% vs. 16.7%, p = 0.009) mainly due to the IBS mixed subtype. There were notable differences in the microbiota composition after geraniol administration, particularly a significant decrease in a genus of Ruminococcaceae, Oscillospira (p = 0.01), a decreasing trend for the Erysipelotrichaceae and Clostridiaceae families (p = 0.1), and an increasing trend for other Ruminococcaceae taxa, specifically Faecalibacterium (p = 0.09). The main circulating proinflammatory cytokines showed no differences between placebo and geraniol arms. Conclusion: LAGS was effective in treating overall IBS symptoms, together with an improvement in the gut microbiota profile, especially for the IBS mixed subtype

Superfluid Density and Field-Induced Magnetism in Ba(Fe1-xCox)2As2 and Sr(Fe1-xCox)2As2 Measured with Muon Spin Relaxation

We report muon spin rotation ($\mu$SR) measurements of single crystal Ba(Fe$_{1-x}$Co$_x$)$_2$As$_2$ and Sr(Fe$_{1-x}$Co$_x$)$_2$As$_2$. From measurements of the magnetic field penetration depth $\lambda$ we find that for optimally- and over-doped samples, $1/\lambda(T\to 0)^2$ varies monotonically with the superconducting transition temperature T$_{\rm C}$. Within the superconducting state we observe a positive shift in the muon precession signal, likely indicating that the applied field induces an internal magnetic field. The size of the induced field decreases with increasing doping but is present for all Co concentrations studied.Comment: 7 pages, accepted for publication in Phys. Rev.

Superconductivity coexisting with phase-separated static magnetic order in (Ba,K)Fe2_{2}As2_{2}, (Sr,Na)Fe2_{2}As2_{2} and CaFe2_{2}As2_{2}

The recent discovery and subsequent developments of FeAs-based superconductors have presented novel challenges and opportunities in the quest for superconducting mechanisms in correlated-electron systems. Central issues of ongoing studies include interplay between superconductivity and magnetism as well as the nature of the pairing symmetry reflected in the superconducting energy gap. In the cuprate and RE(O,F)FeAs (RE = rare earth) systems, the superconducting phase appears without being accompanied by static magnetic order, except for narrow phase-separated regions at the border of phase boundaries. By muon spin relaxation measurements on single crystal specimens, here we show that superconductivity in the AFe$_{2}$As$_{2}$ (A = Ca,Ba,Sr) systems, in both the cases of composition and pressure tunings, coexists with a strong static magnetic order in a partial volume fraction. The superfluid response from the remaining paramagnetic volume fraction of (Ba$_{0.5}$K$_{0.5}$)Fe$_{2}$As$_{2}$ exhibits a nearly linear variation in T at low temperatures, suggesting an anisotropic energy gap with line nodes and/or multi-gap effects.Comment: 14 pages 7 figures (4 for main text and 3 for on-line supplementary documents

Wave-induced extreme water levels in the Puerto Morelos fringing reef lagoon

Wave-induced extreme water levels in the Puerto Morelos fringing reef lagoon are investigated by means of a phase-resolving non-hydrostatic wave model (SWASH). This model solves the nonlinear shallow water equations including non-hydrostatic pressure. The one-dimensional version of the model is implemented in order to investigate wave transformation in fringing reefs. Firstly, the numerical model is validated with (i) laboratory experiments conducted on a physical model (Demirbilek et al., 2007)and (ii) field observations (Coronado et al., 2007). Numerical results show good agreement with both experimental and field data. The comparison against the physical model results, for energetic wave conditions, indicates that high- and low-frequency wave transformation is well reproduced. Moreover, extreme water-level conditions measured during the passage of Hurricane Ivan in Puerto Morelos are also estimated by the numerical tool. Subsequently, the model is implemented at different along-reef locations in Puerto Morelos. Extreme water levels, wave-induced setup, and infragravity wave energy are estimated inside the reef lagoon for different storm wave conditions (<i>H</i><sub>s</sub> >2 m). The numerical results revealed a strong correlation between the offshore sea-swell wave energy and the setup. In contrast, infragravity waves are shown to be the result of a more complex pattern which heavily relies on the reef geometry. Indeed, the southern end of the reef lagoon provides evidence of resonance excitation, suggesting that the reef barrier may act as either a natural flood protection morphological feature, or as an inundation hazard enhancer depending on the incident wave conditions