91 research outputs found

    A Ranking-based, Balanced Loss Function Unifying Classification and Localisation in Object Detection

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    We propose average Localisation-Recall-Precision (aLRP), a unified, bounded, balanced and ranking-based loss function for both classification and localisation tasks in object detection. aLRP extends the Localisation-Recall-Precision (LRP) performance metric (Oksuz et al., 2018) inspired from how Average Precision (AP) Loss extends precision to a ranking-based loss function for classification (Chen et al., 2020). aLRP has the following distinct advantages: (i) aLRP is the first ranking-based loss function for both classification and localisation tasks. (ii) Thanks to using ranking for both tasks, aLRP naturally enforces high-quality localisation for high-precision classification. (iii) aLRP provides provable balance between positives and negatives. (iv) Compared to on average ∼\sim6 hyperparameters in the loss functions of state-of-the-art detectors, aLRP Loss has only one hyperparameter, which we did not tune in practice. On the COCO dataset, aLRP Loss improves its ranking-based predecessor, AP Loss, up to around 55 AP points, achieves 48.948.9 AP without test time augmentation and outperforms all one-stage detectors. Code available at: https://github.com/kemaloksuz/aLRPLoss .Comment: NeurIPS 2020 spotlight pape

    Generating Positive Bounding Boxes for Balanced Training of Object Detectors

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    Two-stage deep object detectors generate a set of regions-of-interest (RoI) in the first stage, then, in the second stage, identify objects among the proposed RoIs that sufficiently overlap with a ground truth (GT) box. The second stage is known to suffer from a bias towards RoIs that have low intersection-over-union (IoU) with the associated GT boxes. To address this issue, we first propose a sampling method to generate bounding boxes (BB) that overlap with a given reference box more than a given IoU threshold. Then, we use this BB generation method to develop a positive RoI (pRoI) generator that produces RoIs following any desired spatial or IoU distribution, for the second-stage. We show that our pRoI generator is able to simulate other sampling methods for positive examples such as hard example mining and prime sampling. Using our generator as an analysis tool, we show that (i) IoU imbalance has an adverse effect on performance, (ii) hard positive example mining improves the performance only for certain input IoU distributions, and (iii) the imbalance among the foreground classes has an adverse effect on performance and that it can be alleviated at the batch level. Finally, we train Faster R-CNN using our pRoI generator and, compared to conventional training, obtain better or on-par performance for low IoUs and significant improvements when trained for higher IoUs for Pascal VOC and MS COCO datasets. The code is available at: https://github.com/kemaloksuz/BoundingBoxGenerator.Comment: To appear in WACV 2

    Symptoms of depression in a large healthy population cohort are related to subjective memory complaints and memory performance in negative contexts.

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    BACKGROUND: Decades of research have investigated the impact of clinical depression on memory, which has revealed biases and in some cases impairments. However, little is understood about the effects of subclinical symptoms of depression on memory performance in the general population. METHODS: Here we report the effects of symptoms of depression on memory problems in a large population-derived cohort (N = 2544), 87% of whom reported at least one symptom of depression. Specifically, we investigate the impact of depressive symptoms on subjective memory complaints, objective memory performance on a standard neuropsychological task and, in a subsample (n = 288), objective memory in affective contexts. RESULTS: There was a dissociation between subjective and objective memory performance, with depressive symptoms showing a robust relationship with self-reports of memory complaints, even after adjusting for age, sex, general cognitive ability and symptoms of anxiety, but not with performance on the standardised measure of verbal memory. Contrary to our expectations, hippocampal volume (assessed in a subsample, n = 592) did not account for significant variance in subjective memory, objective memory or depressive symptoms. Nonetheless, depressive symptoms were related to poorer memory for pictures presented in negative contexts, even after adjusting for memory for pictures in neutral contexts. CONCLUSIONS: Thus the symptoms of depression, associated with subjective memory complaints, appear better assessed by memory performance in affective contexts, rather than standardised memory measures. We discuss the implications of these findings for understanding the impact of depressive symptoms on memory functioning in the general population.The Cambridge Centre for Ageing and Neuroscience (Cam-CAN) research was supported by the Biotechnology and Biological Sciences Research Council (grant number BB/H008217/1). SS is supported by UK Medical Research Council Programme MC-A060-5PQ60; RNH and TE are supported by MC-A060-5PR10; RAK is supported by MC-A060-5PR60 and a Sir Henry Wellcome Trust Fellowship (grant number 107392/Z/15/Z)

    Characterising group-level brain connectivity: A framework using Bayesian exponential random graph models

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    The brain can be modelled as a network with nodes and edges derived from a range of imaging modalities: the nodes correspond to spatially distinct regions and the edges to the interactions between them. Whole-brain connectivity studies typically seek to determine how network properties change with a given categorical phenotype such as age-group, disease condition or mental state. To do so reliably, it is necessary to determine the features of the connectivity structure that are common across a group of brain scans. Given the complex interdependencies inherent in network data, this is not a straightforward task. Some studies construct a group-representative network (GRN), ignoring individual differences, while other studies analyse networks for each individual independently, ignoring information that is shared across individuals. We propose a Bayesian framework based on exponential random graph models (ERGM) extended to multiple networks to characterise the distribution of an entire population of networks. Using resting-state fMRI data from the Cam-CAN project, a study on healthy ageing, we demonstrate how our method can be used to characterise and compare the brain's functional connectivity structure across a group of young individuals and a group of old individuals

    Characterising group-level brain connectivity: A framework using Bayesian exponential random graph models.

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    The brain can be modelled as a network with nodes and edges derived from a range of imaging modalities: the nodes correspond to spatially distinct regions and the edges to the interactions between them. Whole-brain connectivity studies typically seek to determine how network properties change with a given categorical phenotype such as age-group, disease condition or mental state. To do so reliably, it is necessary to determine the features of the connectivity structure that are common across a group of brain scans. Given the complex interdependencies inherent in network data, this is not a straightforward task. Some studies construct a group-representative network (GRN), ignoring individual differences, while other studies analyse networks for each individual independently, ignoring information that is shared across individuals. We propose a Bayesian framework based on exponential random graph models (ERGM) extended to multiple networks to characterise the distribution of an entire population of networks. Using resting-state fMRI data from the Cam-CAN project, a study on healthy ageing, we demonstrate how our method can be used to characterise and compare the brain's functional connectivity structure across a group of young individuals and a group of old individuals

    Distinct aspects of frontal lobe structure mediate age-related differences in fluid intelligence and multitasking.

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    Ageing is characterized by declines on a variety of cognitive measures. These declines are often attributed to a general, unitary underlying cause, such as a reduction in executive function owing to atrophy of the prefrontal cortex. However, age-related changes are likely multifactorial, and the relationship between neural changes and cognitive measures is not well-understood. Here we address this in a large (N=567), population-based sample drawn from the Cambridge Centre for Ageing and Neuroscience (Cam-CAN) data. We relate fluid intelligence and multitasking to multiple brain measures, including grey matter in various prefrontal regions and white matter integrity connecting those regions. We show that multitasking and fluid intelligence are separable cognitive abilities, with differential sensitivities to age, which are mediated by distinct neural subsystems that show different prediction in older versus younger individuals. These results suggest that prefrontal ageing is a manifold process demanding multifaceted models of neurocognitive ageing

    Exploring patterns of response across the lifespan: the Cambridge Centre for Ageing and Neuroscience (Cam-CAN) study

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    Abstract Background With declining rates of participation in epidemiological studies there is an important need to attempt to understand what factors might affect response. This study examines the pattern of response at different adult ages within a contemporary cross-sectional population-based cohort, the Cambridge Centre for Ageing and Neuroscience (Cam-CAN). Methods Using logistic regression, we investigated associations between age, gender and Townsend deprivation level for both participants and non-participants. Weighted estimates of the odds ratios with confidence intervals for each demographic characteristic were calculated. Reasons given for refusal were grouped into three broad categories: ‘active’, ‘passive’ and illness preventing interview. Results An association of age and participation was found, with individuals in middle age groups more likely to participate (age group 48–57 OR: 1.8, 95% CI: 1.5–2.2 and age group 58–67 OR: 2.1, 95% CI: 1.7–2.4). Overall, there was no difference in participation between men and women. An association with deprivation was found, with those living in the most deprived areas being the least willing to participate (fifth quintile OR: 0.6, 95% CI: 0.5–0.7). An interaction between age and gender was found whereby younger women and older men were more likely to agree to participate (p = 0.01). Conclusion Our findings highlight some of the factors affecting recruitment into epidemiological studies in the UK and suggest that targeted age-specific recruitment strategies might be needed to increase participation rates in future cohort investigations

    Functional connectivity and structural covariance between regions of interest can be measured more accurately using multivariate distance correlation

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    Studies of brain-wide functional connectivity or structural covariance typically use measures like the Pearson correlation coefficient, applied to data that have been averaged across voxels within regions of interest (ROIs). However, averaging across voxels may result in biased connectivity estimates when there is inhomogeneity within those ROIs, e.g., sub-regions that exhibit different patterns of functional connectivity or structural covariance. Here, we propose a new measure based on "distance correlation"; a test of multivariate dependence of high dimensional vectors, which allows for both linear and non-linear dependencies. We used simulations to show how distance correlation out-performs Pearson correlation in the face of inhomogeneous ROIs. To evaluate this new measure on real data, we use resting-state fMRI scans and T1 structural scans from 2 sessions on each of 214 participants from the Cambridge Centre for Ageing & Neuroscience (Cam-CAN) project. Pearson correlation and distance correlation showed similar average connectivity patterns, for both functional connectivity and structural covariance. Nevertheless, distance correlation was shown to be 1) more reliable across sessions, 2) more similar across participants, and 3) more robust to different sets of ROIs. Moreover, we found that the similarity between functional connectivity and structural covariance estimates was higher for distance correlation compared to Pearson correlation. We also explored the relative effects of different preprocessing options and motion artefacts on functional connectivity. Because distance correlation is easy to implement and fast to compute, it is a promising alternative to Pearson correlations for investigating ROI-based brain-wide connectivity patterns, for functional as well as structural data.The Cambridge Centre for Ageing and Neuroscience (Cam-CAN) research was supported by the Biotechnology and Biological Sciences Research Council (grant number BB/H008217/1). LG is funded by a Rubicon grant from the Netherlands Organization for Scientific Research. RH is funded by UK Medical Research Council Programme MC-A060-5PR10
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