DNA metabarcoding and morphological analysis - Assessment of zooplankton biodiversity in transitional waters

Zooplankton biodiversity assessment is a crucial element in monitoring marine ecosystem processes and community responses to environmental alterations. In order to evaluate the suitability of metabarcoding for zooplankton biodiversity assessment and biomonitoring as a fast and more cost-effective method, seasonal zooplankton sampling was carried out in the Venice Lagoon and the nearby coastal area (Northern Adriatic Sea). The molecular analysis showed higher taxa richness compared to the classical morphological method (224 vs. 88 taxa), discriminating better the meroplanktonic component, morphologically identified only up to order level. Both methods revealed a similar spatio-temporal distribution pattern and the sequence abundances and individual counts were significantly correlated for various taxonomic groups. These results indicate that DNA metabarcoding is an efficient tool for biodiversity assessments in ecosystems with high spatial and temporal variability, where high sampling effort is required as well as fast alert systems for non-native species (NIS)

Zooplankton diel vertical migration in the Corsica Channel (north-western Mediterranean Sea) detected by a moored acoustic Doppler current profiler

Diel vertical migration (DVM) is a survival strategy adopted by zooplankton that we investigated in the Corsica Channel using acoustic Doppler current profiler (ADCP) data from April 2014 to November 2016. The principal aim of the study is to characterize migration patterns and biomass temporal evolution of zooplankton along the water column. The ADCP measured vertical velocity and echo intensity in the water column range between about 70 and 390&thinsp;m (the bottom depth is 443&thinsp;m). During the investigated period, zooplanktonic biomass had a well-defined daily and seasonal cycle, with peaks occurring in late winter to spring (2015 and 2016) when the stratification of the water column is weaker. Zooplanktonic biomass temporal distribution in the whole water column is well correlated with biomass of primary producers, estimated with satellite data. Zooplanktonic blooming and non-blooming periods have been identified and studied separately. During the non-blooming period zooplanktonic biomass was most abundant in the upper and the deep layers, while during the blooming period the upper-layer maximum in zooplanktonic biomass disappeared and the deep layer with high zooplanktonic biomass became thicker. These two layers are likely to correspond to two different zooplanktonic communities. The evolution of zooplanktonic biomass is well correlated with chlorophyll, with phytoplankton biomass peaks preceding the upper-layer secondary production by a lag of about 3.5 weeks. Nocturnal DVM appears to be the main pattern during both periods, but reverse and twilight migration are also detected. Nocturnal DVM was more evident at mid-water than in the deep and the upper layers. DVM occurred with different intensities during blooming and non-blooming periods. One of the main outcomes is that the principal drivers for DVM are light intensity and stratification, but other factors, like the moon cycle and primary production, are also taken in consideration.</p

Epicoccum nigrum P16, a Sugarcane Endophyte, Produces Antifungal Compounds and Induces Root Growth

Background: Sugarcane is one of the most important crops in Brazil, mainly because of its use in biofuel production. Recent studies have sought to determine the role of sugarcane endophytic microbial diversity in microorganism-plant interactions, and their biotechnological potential. Epicoccum nigrum is an important sugarcane endophytic fungus that has been associated with the biological control of phytopathogens, and the production of secondary metabolites. In spite of several studies carried out to define the better conditions to use E. nigrum in different crops, little is known about the establishment of an endophytic interaction, and its potential effects on plant physiology. Methodology/Principal Findings: We report an approach based on inoculation followed by re-isolation, molecular monitoring, microscopic analysis, plant growth responses to fungal colonization, and antimicrobial activity tests to study the basic aspects of the E. nigrum endophytic interaction with sugarcane, and the effects of colonization on plant physiology. The results indicate that E. nigrum was capable of increasing the root system biomass and producing compounds that inhibit the in vitro growth of sugarcane pathogens Fusarium verticillioides, Colletotrichum falcatum, Ceratocystis paradoxa, and Xanthomomas albilineans. In addition, E. nigrum preferentially colonizes the sugarcane surface and, occasionally, the endophytic environment. Conclusions/Significance: Our work demonstrates that E. nigrum has great potential for sugarcane crop application because it is capable of increasing the root system biomass and controlling pathogens. The study of the basic aspects of the interaction of E. nigrum with sugarcane demonstrated the facultative endophytism of E. nigrum and its preference for the phylloplane environment, which should be considered in future studies of biocontrol using this species. In addition, this work contributes to the knowledge of the interaction of this ubiquitous endophyte with the host plant, and also to a better use of microbial endophytes in agriculture.State of Sao Paulo Research Foundation (FAPESP)FAPESP (State of Sao Paulo Research Foundation) [02/14143-3, 10/08286-2]Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq)Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq

Current status and trends of biological invasions in the Lagoon of Venice, a hotspot of marine NIS introductions in the Mediterranean Sea

This paper provides an updated account of the occurrence and abundance of non-indigenous species (NIS) in an area of high risk of introduction: the Lagoon of Venice (Italy). This site is a known hotspot of NIS introductions within the Mediterranean Sea, hosting all the most important vectors of introduction of marine NIS—shipping, recreational boating, shellfish culture and live seafood trade. The recent literature demonstrates that the number of NIS in Venice is continuously changing, because new species are being introduced or identified, and new evidence shows either an exotic origin of species previously believed to be native, or a native origin of formerly believed ‘‘aliens’’, or demonstrates the cryptogenic nature of others. The number of NIS introduced in the Venetian lagoon currently totals 71, out of which 55 are established. This number exceeds those displayed by some nations like Finland, Portugal or Libya. Macroalgae are the taxonomic group with the highest number of introduced species (41 % of NIS): the most likely vector for their introduction is shellfish culture. The source region of NIS introduced to Venice is mainly represented by other Mediterranean or European sites (76 %). The Lagoon of Venice represents a sink but also a source of NIS in the Mediterranean Sea, as it is the site of first record of several NIS, which have since further spread elsewhere.This paper provides an updated account of the occurrence and abundance of non-indigenous species (NIS) in an area of high risk of introduction: the Lagoon of Venice (Italy). This site is a known hotspot of NIS introductions within the Mediterranean Sea, hosting all the most important vectors of introduction of marine NIS-shipping, recreational boating, shellfish culture and live seafood trade. The recent literature demonstrates that the number of NIS in Venice is continuously changing, because new species are being introduced or identified, and new evidence shows either an exotic origin of species previously believed to be native, or a native origin of formerly believed "aliens", or demonstrates the cryptogenic nature of others. The number of NIS introduced in the Venetian lagoon currently totals 71, out of which 55 are established. This number exceeds those displayed by some nations like Finland, Portugal or Libya. Macroalgae are the taxonomic group with the highest number of introduced species (41 % of NIS): the most likely vector for their introduction is shellfish culture. The source region of NIS introduced to Venice is mainly represented by other Mediterranean or European sites (76 %). The Lagoon of Venice represents a sink but also a source of NIS in the Mediterranean Sea, as it is the site of first record of several NIS, which have since further spread elsewhere

The Relevance of the Territorial Dimension in EU Policies and the Role of Tourism

The disparities, inequalities as well as the different trajectories of social and economic development that still characterize the regions of the EU today demonstrate the importance of a debate on the spatial dimension of European policies. This paper analyses the implications of strengthening the spatial dimension in the different EU programs, highlighting the importance of the concept of territorial cohesion and the role that a strategic sector such as tourism can play in implementing this concept. Therefore, the added value of tourism and the potential of territorial cohesion should play an important role in future European policies and fundin