A spatially explicit model for competition among specialists and generalists in a heterogeneous environment

Competition is a major force in structuring ecological communities. The strength of competition can be measured using the concept of a niche. A niche comprises the set of requirements of an organism in terms of habitat, environment and functional role. The more niches overlap, the stronger competition is. The niche breadth is a measure of specialization: the smaller the niche space of an organism, the more specialized the organism is. It follows that, everything else being equal, generalists tend to be more competitive than specialists. In this paper, we compare the outcome of competition among generalists and specialists in a spatial versus a nonspatial habitat in a heterogeneous environment. Generalists can utilize the entire habitat, whereas specialists are restricted to their preferred habitat type. We find that although competitiveness decreases with specialization, specialists are more competitive in a spatial than in a nonspatial habitat as patchiness increases.Comment: Published at http://dx.doi.org/10.1214/105051606000000394 in the Annals of Applied Probability (http://www.imstat.org/aap/) by the Institute of Mathematical Statistics (http://www.imstat.org

Spatially explicit non-Mendelian diploid model

We introduce a spatially explicit model for the competition between type $a$ and type $b$ alleles. Each vertex of the $d$-dimensional integer lattice is occupied by a diploid individual, which is in one of three possible states or genotypes: $aa$, $ab$ or $bb$. We are interested in the long-term behavior of the gene frequencies when Mendel's law of segregation does not hold. This results in a voter type model depending on four parameters; each of these parameters measures the strength of competition between genes during meiosis. We prove that with or without a spatial structure, type $a$ and type $b$ alleles coexist at equilibrium when homozygotes are poor competitors. The inclusion of a spatial structure, however, reduces the parameter region where coexistence occurs.Comment: Published in at http://dx.doi.org/10.1214/09-AAP598 the Annals of Applied Probability (http://www.imstat.org/aap/) by the Institute of Mathematical Statistics (http://www.imstat.org

Stochastic spatial models of host-pathogen and host-mutualist interactions I

Mutualists and pathogens, collectively called symbionts, are ubiquitous in plant communities. While some symbionts are highly host-specific, others associate with multiple hosts. The outcomes of multispecies host-symbiont interactions with different degrees of specificity are difficult to predict at this point due to a lack of a general conceptual framework. Complicating our predictive power is the fact that plant populations are spatially explicit, and we know from past research that explicit space can profoundly alter plant-plant interactions. We introduce a spatially explicit, stochastic model to investigate the role of explicit space and host-specificity in multispecies host-symbiont interactions. We find that in our model, pathogens can significantly alter the spatial structure of plant communities, promoting coexistence, whereas mutualists appear to have only a limited effect. Effects are more pronounced the more host-specific symbionts are.Comment: Published at http://dx.doi.org/10.1214/105051605000000782 in the Annals of Applied Probability (http://www.imstat.org/aap/) by the Institute of Mathematical Statistics (http://www.imstat.org

Maullinia braseltonii sp. nov. (Rhizaria, Phytomyxea, Phagomyxida) : A Cyst-forming Parasite of the Bull Kelp Durvillaea spp. (Stramenopila, Phaeophyceae, Fucales)

Help in biomass collection by David J. Patiño (UACh), Liliana A. Muñoz (University of Aberdeen (UoA)) and Alexandra Mystikou (South Atlantic Environmental Research Institute & UoA), and in conducting electron microscopy by Gillian Milne (Aberdeen Microscopy Facility) is acknowledged. Thanks are due to the three anonymous reviewers, whose comments helped to improve the earlier version of this manuscript. PM was funded by Conicyt (BecasChile N° 72130422) for PhD studies at the University of Aberdeen, and by the NERC IOF Pump-priming (scheme NE/L013223/1) for activities at the Scottish Association for Marine Sciences. RW thanks financial support from Gobierno Regional de Los Lagos (projects FIC 2012 E7259-2 and FIC 2013 BIP30234872-0) and Fondef, Conicyt (HUAM AQ12I0010), which allows the sampling expeditions at Chiloe Island by David J. Patiño, Liliana Muñoz and PM. SN was funded by the Austrian Science Fund (FWF): grant J3175-B20 (Erwin Schrödinger Fellowship) and grant Y801-B16 (START-grant). PvW is supported by the UoA, BBSRC and NERC. Also, the MASTS pooling initiative (Marine Alliance for Science and Technology for Scotland, funded by the Scottish Funding Council and contributing institutions; grant reference HR09011) is gratefully acknowledged for its support to FCK. Finally, we would like to thank the UoA, Shackleton Fund (FCK) and the John Cheek Fund (FCK) for supporting the expeditions of Alexandra Mystikou, PvW and FCK to the Falkland Islands.Peer reviewedPublisher PD

Raman cooling and heating of two trapped Ba+ ions

We study cooling of the collective vibrational motion of two 138Ba+ ions confined in an electrodynamic trap and irradiated with laser light close to the resonances S_1/2-P_1/2 (493 nm) and P_1/2-D_3/2 (650 nm). The motional state of the ions is monitored by a spatially resolving photo multiplier. Depending on detuning and intensity of the cooling lasers, macroscopically different motional states corresponding to different ion temperatures are observed. We also derive the ions' temperature from detailed analytical calculations of laser cooling taking into account the Zeeman structure of the energy levels involved. The observed motional states perfectly match the calculated temperatures. Significant heating is observed in the vicinity of the dark resonances of the Zeeman-split S_1/2-D_3/2 Raman transitions. Here two-photon processes dominate the interaction between lasers and ions. Parameter regimes of laser light are identified that imply most efficient laser cooling.Comment: 8 pages, 5 figure

Error-resistant Single Qubit Gates with Trapped Ions

Coherent operations constitutive for the implementation of single and multi-qubit quantum gates with trapped ions are demonstrated that are robust against variations in experimental parameters and intrinsically indeterministic system parameters. In particular, pulses developed using optimal control theory are demonstrated for the first time with trapped ions. Their performance as a function of error parameters is systematically investigated and compared to composite pulses.Comment: 5 pages 5 figure

The Origin of Jovian Planets in Protostellar Disks: The Role of Dead Zones

The final masses of Jovian planets are attained when the tidal torques that they exert on their surrounding protostellar disks are sufficient to open gaps in the face of disk viscosity, thereby shutting off any further accretion. In sufficiently well-ionized disks, the predominant form of disk viscosity originates from the Magneto-Rotational Instability (MRI) that drives hydromagnetic disk turbulence. In the region of sufficiently low ionization rate -- the so-called dead zone -- turbulence is damped and we show that lower mass planets will be formed. We considered three ionization sources (X-rays, cosmic rays, and radioactive elements) and determined the size of a dead zone for the total ionization rate by using a radiative, hydrostatic equilibrium disk model developed by Chiang et al. (2001). We studied a range of surface mass density (Sigma_{0}=10^3 - 10^5 g cm^{-2}) and X-ray energy (kT_{x}=1 - 10 keV). We also compared the ionization rate of such a disk by X-rays with cosmic rays and find that the latter dominate X-rays in ionizing protostellar disks unless the X-ray energy is very high (5 - 10 keV). Among our major conclusions are that for typical conditions, dead zones encompass a region extending out to several AU -- the region in which terrestrial planets are found in our solar system. Our results suggest that the division between low and high mass planets in exosolar planetary systems is a consequence of the presence of a dead zone in their natal protoplanetary disks. We also find that the extent of a dead zone is mainly dependent on the disk's surface mass density. Our results provide further support for the idea that Jovian planets in exosolar systems must have migrated substantially inwards from their points of origin.Comment: 28 pages, 10 figures, accepted by Ap