4,495 research outputs found
Rapid generation of chromosome-specific alphoid DNA probes using the polymerase chain reaction
Non-isotopic in situ hybridization of chromosome-specific alphoid DNA probes has become a potent tool in the study of numerical aberrations of specific human chromosomes at all stages of the cell cycle. In this paper, we describe approaches for the rapid generation of such probes using the polymerase chain reaction (PCR), and demonstrate their chromosome specificity by fluorescence in situ hybridization to normal human metaphase spreads and interphase nuclei. Oligonucleotide primers for conserved regions of the alpha satellite monomer were used to generate chromosome-specific DNA probes from somatic hybrid cells containing various human chromosomes, and from DNA libraries from sorted human chromosomes. Oligonucleotide primers for chromosome-specific regions of the alpha satellite monomer were used to generate specific DNA probes for the pericentromeric heterochromatin of human chromosomes 1, 6, 7, 17 and X directly from human genomic DNA
Fluctuations of water near extended hydrophobic and hydrophilic surfaces
We use molecular dynamics simulations of the SPC-E model of liquid water to
derive probability distributions for water density fluctuations in probe
volumes of different shapes and sizes, both in the bulk as well as near
hydrophobic and hydrophilic surfaces. To obtain our results, we introduce a
biased sampling of coarse-grained densities, which in turn biases the actual
solvent density. The technique is easily combined with molecular dynamics
integration algorithms. Our principal result is that the probability for
density fluctuations of water near a hydrophobic surface, with or without
surface-water attractions, is akin to density fluctuations at the water-vapor
interface. Specifically, the probability of density depletion near the surface
is significantly larger than that in bulk. In contrast, we find that the
statistics of water density fluctuations near a model hydrophilic surface are
similar to that in the bulk
Explanation of the Gibbs paradox within the framework of quantum thermodynamics
The issue of the Gibbs paradox is that when considering mixing of two gases
within classical thermodynamics, the entropy of mixing appears to be a
discontinuous function of the difference between the gases: it is finite for
whatever small difference, but vanishes for identical gases. The resolution
offered in the literature, with help of quantum mixing entropy, was later shown
to be unsatisfactory precisely where it sought to resolve the paradox.
Macroscopic thermodynamics, classical or quantum, is unsuitable for explaining
the paradox, since it does not deal explicitly with the difference between the
gases. The proper approach employs quantum thermodynamics, which deals with
finite quantum systems coupled to a large bath and a macroscopic work source.
Within quantum thermodynamics, entropy generally looses its dominant place and
the target of the paradox is naturally shifted to the decrease of the maximally
available work before and after mixing (mixing ergotropy). In contrast to
entropy this is an unambiguous quantity. For almost identical gases the mixing
ergotropy continuously goes to zero, thus resolving the paradox. In this
approach the concept of ``difference between the gases'' gets a clear
operational meaning related to the possibilities of controlling the involved
quantum states. Difficulties which prevent resolutions of the paradox in its
entropic formulation do not arise here. The mixing ergotropy has several
counter-intuitive features. It can increase when less precise operations are
allowed. In the quantum situation (in contrast to the classical one) the mixing
ergotropy can also increase when decreasing the degree of mixing between the
gases, or when decreasing their distinguishability. These points go against a
direct association of physical irreversibility with lack of information.Comment: Published version. New title. 17 pages Revte
Examination of relaxin and its receptors expression in pig gametes and embryos
<p>Abstract</p> <p>Background</p> <p>Relaxin is a small peptide also known as pregnancy hormone in many mammals. It is synthesized by both male and female tissues, and its secretions are found in various body fluids such as plasma serum, ovarian follicular fluid, utero-oviduct secretions, and seminal plasma of many mammals, including pigs. However, the presence and effects of relaxin in porcine gametes and embryos are still not well-known. The purpose of this study was to assess the presence of relaxin and its receptors RXFP1 and RXFP2 in pig gametes and embryos.</p> <p>Methods</p> <p>Immature cumulus-oocyte complexes (COCs) were aspirated from sows' ovaries collected at the abattoir. After <it>in vitro</it>-maturation, COCs were <it>in vitro</it>-fertilized and cultured. For studies, immature and mature COCs were separately collected, and oocytes were freed from their surrounding cumulus cells. Denuded oocytes, cumulus cells, mature boar spermatozoa, zygotes, and embryos (cleaved and blastocysts) were harvested for temporal and spatial gene expression studies. Sections of ovary, granulosa and neonatal porcine uterine cells were also collected to use as controls.</p> <p>Results</p> <p>Using both semi-quantitative and quantitative PCRs, relaxin transcripts were not detected in all tested samples, while RXFP1 and RXFP2 mRNA were present. Both receptor gene products were found at higher levels in oocytes compared to cumulus cells, irrespective of the maturation time. Cleaved-embryos contained higher levels of RXFP2 mRNA, whereas, blastocysts were characterized by a higher RXFP1 mRNA content. Using western-immunoblotting or <it>in situ </it>immunofluorescence, relaxin and its receptor proteins were detected in all samples. Their fluorescence intensities were consistently more important in mature oocytes than immature ones. The RXFP1 and RXFP2 signal intensities were mostly located in the plasma membrane region, while the relaxin ones appeared homogeneously distributed within the oocytes and embryonic cells. Furthermore, spermatozoa displayed stronger RXFP2 signal than RXFP1 after western-immunoblotting.</p> <p>Conclusion</p> <p>All together, our findings suggest potential roles of relaxin and its receptors during oocyte maturation, early embryo development, and beyond.</p
Bostonia: The Boston University Alumni Magazine. Volume 32
Founded in 1900, Bostonia magazine is Boston University's main alumni publication, which covers alumni and student life, as well as university activities, events, and programs
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