725 research outputs found
Viewpoints: A high-performance high-dimensional exploratory data analysis tool
Scientific data sets continue to increase in both size and complexity. In the
past, dedicated graphics systems at supercomputing centers were required to
visualize large data sets, but as the price of commodity graphics hardware has
dropped and its capability has increased, it is now possible, in principle, to
view large complex data sets on a single workstation. To do this in practice,
an investigator will need software that is written to take advantage of the
relevant graphics hardware. The Viewpoints visualization package described
herein is an example of such software. Viewpoints is an interactive tool for
exploratory visual analysis of large, high-dimensional (multivariate) data. It
leverages the capabilities of modern graphics boards (GPUs) to run on a single
workstation or laptop. Viewpoints is minimalist: it attempts to do a small set
of useful things very well (or at least very quickly) in comparison with
similar packages today. Its basic feature set includes linked scatter plots
with brushing, dynamic histograms, normalization and outlier detection/removal.
Viewpoints was originally designed for astrophysicists, but it has since been
used in a variety of fields that range from astronomy, quantum chemistry, fluid
dynamics, machine learning, bioinformatics, and finance to information
technology server log mining. In this article, we describe the Viewpoints
package and show examples of its usage.Comment: 18 pages, 3 figures, PASP in press, this version corresponds more
closely to that to be publishe
Atom in a coherently controlled squeezed vacuum
A broadband squeezed vacuum photon field is characterized by a complex
squeezing function. We show that by controlling the wavelength dependence of
its phase it is possible to change the dynamics of the atomic polarization
interacting with the squeezed vacuum. Such a phase modulation effectively
produces a finite range temporal interaction kernel between the two quadratures
of the atomic polarization yielding the change in the decay rates as well as
the appearance of additional oscillation frequencies. We show that decay rates
slower than the spontaneous decay rate can be achieved even for a squeezed bath
in the classic regime. For linear and quadratic phase modulations the power
spectrum of the scattered light exhibits narrowing of the central peak due to
the modified decay rates. For strong phase modulations side lobes appear
symmetrically around the central peak reflecting additional oscillation
frequencies.Comment: 4 pages, 4 figure
Semiclassical treatment of fusion processes in collisions of weakly bound nuclei
We describe a semiclassical treatment of nuclear fusion reactions involving
weakly bound nuclei. In this treatment, the complete fusion probabilities are
approximated by products of two factors: a tunneling probability and the
probability that the system is in its ground state at the strong absorption
radius. We investigate the validity of the method in a schematic two-channel
application, where the channels in the continuum are represented by a single
resonant state. Comparisons with full coupled-channels calculations are
performed. The agreement between semiclassical and quantal calculations isquite
good, suggesting that the procedure may be extended to more sophisticated
discretizations of the continuum.Comment: 11 pages, 5 figure
Rapid, Single-Step Protein Encapsulation via Flash NanoPrecipitation
Flash NanoPrecipitation (FNP) is a rapid method for encapsulating hydrophobic materials in polymer nanoparticles with high loading capacity. Encapsulating biologics such as proteins remains a challenge due to their low hydrophobicity (logP \u3c 6) and current methods require multiple processing steps. In this work, we report rapid, single-step protein encapsulation via FNP using bovine serum albumin (BSA) as a model protein. Nanoparticle formation involves complexation and precipitation of protein with tannic acid and stabilization with a cationic polyelectrolyte. Nanoparticle self-assembly is driven by hydrogen bonding and electrostatic interactions. Using this approach, high encapsulation efficiency (up to ~80%) of protein can be achieved. The resulting nanoparticles are stable at physiological pH and ionic strength. Overall, FNP is a rapid, efficient platform for encapsulating proteins for various applications
Evaluation of discretization procedures for transition elements in adaptive mesh refinement
Three transition interpolation schemes for use in h-or r-refinement have been analyzed in terms of accuracy, implementation ease and extendability. They include blending-function interpolation, displacement averaging, and strain matching at discrete points along the transition edge lines. The results suggest that the choice of matching depends strongly on the element formulations, (viz. displacement or assumed strain, etc.) and mesh refinement criteria employed, and to a lesser extent the choice of computer architecture (serial vs. parallel) and the equation solution procedures. A recommended pairing of some of the elements with the choice factors is suggested
Instantons and radial excitations in attractive Bose-Einstein condensates
Imaginary- and real-time versions of an equation for the condensate density
are presented which describe dynamics and decay of any spherical Bose-Einstein
condensate (BEC) within the mean field appraoch. We obtain quantized energies
of collective finite amplitude radial oscillations and exact numerical
instanton solutions which describe quantum tunneling from both the metastable
and radially excited states of the BEC of 7Li atoms. The mass parameter for the
radial motion is found different from the gaussian value assumed hitherto, but
the effect of this difference on decay exponents is small. The collective
breathing states form slightly compressed harmonic spectrum, n=4 state lying
lower than the second Bogolyubov (small amplitude) mode. The decay of these
states, if excited, may simulate a shorter than true lifetime of the metastable
state. By scaling arguments, results extend to other attractive BEC-s.Comment: 6 pages, 3 figure
Limitation of energy deposition in classical N body dynamics
Energy transfers in collisions between classical clusters are studied with
Classical N Body Dynamics calculations for different entrance channels. It is
shown that the energy per particle transferred to thermalised classical
clusters does not exceed the energy of the least bound particle in the cluster
in its ``ground state''. This limitation is observed during the whole time of
the collision, except for the heaviest system.Comment: 13 pages, 15 figures, 1 tabl
Coulomb Drag of Edge Excitations in the Chern-Simons Theory of the Fractional Quantum Hall Effect
Long range Coulomb interaction between the edges of a Hall bar changes the
nature of the gapless edge excitations. Instead of independent modes
propagating in opposite directions on each edge as expected for a short range
interaction one finds elementary excitations living simultaneously on both
edges, i.e. composed of correlated density waves propagating in the same
direction on opposite edges. We discuss the microscopic features of this
Coulomb drag of excitations in the fractional quantum Hall regime within the
framework of the bosonic Chern-Simons Landau-Ginzburg theory. The dispersion
law of these novel excitations is non linear and depends on the distance
between the edges as well as on the current that flows through the sample. The
latter dependence indicates a possibility of parametric excitation of these
modes. The bulk distributions of the density and currents of the edge
excitations differ significantly for short and long range interactions.Comment: 11 pages, REVTEX, 2 uuencoded postscript figure
Interaction and Localization of One-electron Orbitals in an Organic Molecule: Fictitious Parameter Analysis for Multi-physics Simulations
We present a new methodology to analyze complicated multi-physics simulations
by introducing a fictitious parameter. Using the method, we study quantum
mechanical aspects of an organic molecule in water. The simulation is
variationally constructed from the ab initio molecular orbital method and the
classical statistical mechanics with the fictitious parameter representing the
coupling strength between solute and solvent. We obtain a number of
one-electron orbital energies of the solute molecule derived from the
Hartree-Fock approximation, and eigenvalue-statistical analysis developed in
the study of nonintegrable systems is applied to them. Based on the results, we
analyze localization properties of the electronic wavefunctions under the
influence of the solvent.Comment: 4 pages, 5 figures, the revised version will appear in J. Phys. Soc.
Jpn. Vol.76 (No.1
- …