Statistical Image Reconstruction for High-Throughput Thermal Neutron Computed Tomography

Neutron Computed Tomography (CT) is an increasingly utilised non-destructive analysis tool in material science, palaeontology, and cultural heritage. With the development of new neutron imaging facilities (such as DINGO, ANSTO, Australia) new opportunities arise to maximise their performance through the implementation of statistically driven image reconstruction methods which have yet to see wide scale application in neutron transmission tomography. This work outlines the implementation of a convex algorithm statistical image reconstruction framework applicable to the geometry of most neutron tomography instruments with the aim of obtaining similar imaging quality to conventional ramp filtered back-projection via the inverse Radon transform, but using a lower number of measured projections to increase object throughput. Through comparison of the output of these two frameworks using a tomographic scan of a known 3 material cylindrical phantom obtain with the DINGO neutron radiography instrument (ANSTO, Australia), this work illustrates the advantages of statistical image reconstruction techniques over conventional filter back-projection. It was found that the statistical image reconstruction framework was capable of obtaining image estimates of similar quality with respect to filtered back-projection using only 12.5% the number of projections, potentially increasing object throughput at neutron imaging facilities such as DINGO eight-fold

Hydrothermal activity and magma genesis along a propagating back-arc basin: Valu Fa Ridge (southern Lau Basin)

Valu Fa Ridge is an intraoceanic back-arc spreading center located at the southern prolongation of the Lau basin. Bathymetric observations as well as detailed sampling have been carried out along the spreading axis in order to trace hydrothermal and volcanic activity and to study magma generation processes. The survey shows that widespread lava flows from recent volcanic eruptions covered most of the Vai Lili hydrothermal vent field; only diffuse low-temperature discharge and the formation of thin layers of siliceous precipitates have been observed. Evidence of present-day hydrothermal activity at the Hine Hina site is indicated by a thermal anomaly in the overlying water column. Our studies did not reveal any signs of hydrothermal activity either above the seismically imaged magma chamber at 22°25′S or across the southern rift fault zone (22°51′S). Lavas recovered along the Valu Fa Ridge range from basaltic andesites to rhyolites with SiO2 contents higher than reported from any other intraoceanic back-arc basin. On the basis of the highly variable degrees of crystal fractionation along axis, the development of small disconnected magma bodies is suggested. In addition, the geochemical character of the volcanic rocks shows that the transition zone from oceanic spreading to propagating rifting is located south of the Hine Hina vent field in the vicinity of 22°35′S

Along- and Across-Arc Variations in the Southern Volcanic Zone, Chile

Within Collaborative Research Center (SFB574), we are studying the changes in the chemistry of olivinebearing volcanic rocks along the volcanic front of the Southern Volcanic Zone (SVZ) in Chile and in the rear and backarc in Argentina. Samples from the volcanic front (VF) have typical trace element signatures of subduction zone volcanic rocks, characterized, for example, by negative Nb and Ta anomalies and positive Pb, Sr, Cs, Rb, Ba, Th and U anomalies on incompatible element (spider) diagrams. Samples from Longavi in the forearc are distinct in having lower abundances of the HREE's, high Sr/Y and geochemical signatures characteristic of adakitic rocks believed to be derived through melting of the subducting slab. The northern Southern Volcanic Zone (NSVZ) samples from Tupungatito and San José have the most enriched highly to moderately incompatible element ratios, high Rb/Ba and low La/Ta and Ba/La, suggesting involvement of lower crust in the petrogenesis of these rocks. We observe systematic variations in Sr and Nd isotopic compositions along the arc, with Sr isotopes showing a dramatic increase and Nd isotopes showing a dramatic decrease in the NSVZ, which is where the crust begins to thicken significantly. The increase in Sr and decrease in Nd in the VF is coupled with an increase in the degree of differentiation of the Tupungatito and San José (SiO2 > 58%, MgO = 2-4%) volcanoes. On the Pb isotope diagrams, the VF rocks trend from MORB-like compositions to the field for pelagic sediments, consistent with involvement of subducted sediments in generating the VF rocks. Interestingly, samples from the NSVZ form the lower end of the VF array (have the least radiogenic Pb isotopic compositions) on the uranogenic Pb isotope diagram, but extend to the left of the rest of the VF array on the thorogenic Pb isotope diagram, showing evidence of at least a second enriched component. The presence of the second enriched component could reflect assimilation of lower crust or addition of lower crust through subduction erosion into the manlte wedge. Quaternary backarc samples in Argentina also show subduction signatures in their incompatible elements but generally show lower fluid signatures than the VF samples. Although the Pb isotopic compositions of backarc rocks are similar to MORB, the low Nd isotopic compositions indicate the presence of enriched material within the backarc. Although no systematic variation is seen in Sr and Nd isotopic composition from north to souths, the Pb isotope ratios show systematic spatial variations with the northern samples having the most enriched Pb isotope ratios. The lower fluid signatures in the backarc volcanoes, coupled with less radiogenic Pb isotopic compositions are consistent with a decreasing influence of the subduction signature into the backarc. With the addition of Hf and O isotope data we should be able to better constrain the different reservoirs involved in generating the diverse geochemical compositions of the SVZ volcanic rocks

Specifically regulated genes in malignant melanoma tissues identified by subtractive hybridization

A polymerase chain reaction (PCR)-based subtractive hybridization technique was used to identify transformation-related genes in malignant melanoma. Melanoma biopsies were compared with tissues of benign melanocytic naevi and 549 gene fragments were screened using arrayed filters. Thirty-eight clones were confirmed to be differentially expressed representing 30 different genes (18 melanoma-specific and 12 naevus-specific genes). To further confirm differential gene expression, Northern blot analyses with six of the 30 genes as probes were performed. All six were differentially expressed in benign and malignant melanocytic lesions, specifically dbpB/YB-1, 67-kDa laminin receptor, CAGH-3, 71-kDa heat shock protein and two unknown genes. The expression levels of these genes were then analysed in 50 different tissues to determine their overall expression profile. In conclusion, the technique of PCR-based subtractive hybridization in combination with arrayed filters allows detection of differences in gene expression even in tissues from which high-quality RNA is hard to isolate. The genes identified in this study are of interest because of their potential role in the pathogenesis of malignant melanoma. © 2000 Cancer Research Campaig

Exploring patterns of recurrent melanoma in Northeast Scotland to inform the introduction a digital self-examination intervention

Peer reviewedPublisher PD

Study of the middle ear behavior considering the presence of fluid

O objetivo deste trabalho foi estudar a influência de diferentes fluidos dentro e fora da cavidade timpânica no comportamento biomecânico do ouvido médio. O modelo computacional 3 D da cadeia tímpano‐ossicular foi construído através de imagens de tomografia axial computorizada (TAC). Após a construção do modelo da cadeia tímpano‐ossicular, para a parte interna da membrana timpânica foi criada a caixa timpânica, que inclui toda a cadeia ossicular, e para a parte externa da membrana foi criada uma passagem, simulando o canal auditivo externo. A discretização do modelo foi feita utilizando o método dos elementos finitos, com base no software ABAQUS. As propriedades mecânicas foram extraídas de trabalhos anteriores. Foram obtidos os deslocamentos do umbo e de um ponto central da platina do estribo, para um nível de pressão sonora de 105 dB aplicada na membrana timpânica, comparando a cadeia tímpano‐ossicular e os diferentes níveis de pressão externa e interna do ouvido médio (fluido líquido e fluido gasoso). Os resultados demonstram que o comportamento biomecânico do ouvido médio é diferente para os diferentes níveis de pressões testadas neste modelo. Quando utilizada uma pressão de fluido líquido, os deslocamentos são de amplitude inferior quando comparados com os resultados obtidos com pressão de ar.The objective of this work is to study the influence of different fluids of the tympanic cavity into the biomechanical behavior of the middle ear. The 3 D computer model of the tympanic ossicular chain was built using images from computed tomography (CT). After construction of the tympanic ossicular chain model, it was adapted the simulation by placing the passage to the external auditory canal and to the tympanic cavity. The discretization of the model was made using the finite element method based on ABAQUS software. The mechanical properties were extracted from previous works. The umbo and the stapes footplate displacements, for a sound pressure level of 105 dB applied in tympanic membrane were obtained, comparing the tympanic ossicular chain and the different levels of external and internal pressure in the middle ear (liquid and air). The results demonstrate that the biomechanical behavior of the middle ear is different for different levels of pressure tested in this model. When using liquid, displacements are of lower amplitude when compared with the results obtained with air.Peer Reviewe

Origin of fluids and anhydrite precipitation at the sediment-hosted Grimsey hydrothermal field north of Iceland

The sediment-hosted Grimsey hydrothermal field is situated in the Tjörnes fracture zone (TFZ) which represents the transition from northern Iceland to the southern Kolbeinsey Ridge. The TFZ is characterized by a ridge jump of 75 km causing widespread extension of the oceanic crust in this area. Hydrothermal activity occurs in the Grimsey field in a 300 m×1000 m large area at a water depth of 400 m. Active and inactive anhydrite chimneys up to 3 meters high and hydrothermal anhydrite mounds are typical for this field. Clear, metal-depleted, up to 250 °C hydrothermal fluids are venting from the active chimneys. Anhydrite samples collected from the Grimsey field average 21.6 wt.% Ca, 1475 ppm Sr and 3.47 wt.% Mg. The average molar Sr/Ca ratio is 3.3×10−3. Sulfur isotopes of anhydrite have typical seawater values of 22±0.7‰ δ34S, indicating a seawater source for SO42−. Strontium isotopic ratios average 0.70662±0.00033, suggesting the precipitation of anhydrite from a hydrothermal fluid–seawater mixture. The endmember of the venting hydrothermal fluids calculated on a Mg-zero basis contains 59.8 μmol/kg Sr, 13.2 mmol/kg Ca and a 87Sr/86Sr ratio of 0.70634. The average Sr/Ca partition coefficient between the hydrothermal fluids and anhydrite of about 0.67 implies precipitation from a non-evolved fluid. A model for fluid evolution in the Grimsey hydrothermal field suggests mixing of upwelling hydrothermal fluids with shallowly circulating seawater. Before and during mixing, seawater is heated to 200–250 °C which causes anhydrite precipitation and probably the formation of an anhydrite-rich zone beneath the seafloor

Expression of interleukin 10 in human melanoma.

The expression of interleukin 10 (IL-10) mRNA in human malignant melanoma was investigated by reverse transcriptase polymerase chain reaction analysis. Selective expression of IL-10 mRNA in tissues of primary melanomas and melanoma metastases was found in comparison with normal skin. In addition, strong expression of IL-10 mRNA and of biologically active IL-10 was detected in 3 out of 13 melanoma cell lines. Normal melanocytes consistently expressed low levels of IL-10 mRNA but did not produce detectable IL-10 protein, nor did keratinocytes or fibroblasts. The production of biologically active IL-10 by melanoma cell lines suggests that IL-10 mRNA in melanoma lesions may derive at least in part from the tumour cells themselves. Tumour-infiltrating cells, however, could also be a source of IL-10 in melanoma tissues. The presence of IL-10 in melanoma lesions may contribute to the postulated 'paralysis' of an anti-melanoma immune response

Post-Collisional Transition from Subduction to Intraplate-type Magmatism in the Westernmost Mediterranean: Evidence for Continental-Edge Delamination of Subcontinental Lithosphere

Post-collisional magmatism in the southern Iberian and northwestern African continental margins contains important clues for the understanding of a possible causal connection between movements in the Earth's upper mantle, the uplift of continental lithosphere and the origin of circum-Mediterranean igneous activity. Systematic geochemical and geochronological studies (major and trace element, Sr–Nd–Pb-isotope analysis and laser 40Ar/39Ar-age dating) on igneous rocks provide constraints for understanding the post-collisional history of the southern Iberian and northwestern African continental margins. Two groups of magmatic rocks can be distinguished: (1) an Upper Miocene to Lower Pliocene (8·2–4·8 Ma), Si–K-rich group including high-K (calc-alkaline) and shoshonitic series rocks; (2) an Upper Miocene to Pleistocene (6·3–0·65 Ma), Si-poor, Na-rich group including basanites and alkali basalts to hawaiites and tephrites. Mafic samples from the Si–K-rich group generally show geochemical affinities with volcanic rocks from active subduction zones (e.g. Izu–Bonin and Aeolian island arcs), whereas mafic samples from the Si-poor, Na-rich group are geochemically similar to lavas found in intraplate volcanic settings derived from sub-lithospheric mantle sources (e.g. Canary Islands). The transition from Si-rich (subduction-related) to Si-poor (intraplate-type) magmatism between 6·3 Ma (first alkali basalt) and 4·8 Ma (latest shoshonite) can be observed both on a regional scale and in individual volcanic systems. Si–K-rich and Si-poor igneous rocks from the continental margins of southern Iberia and northwestern Africa are, respectively, proposed to have been derived from metasomatized subcontinental lithosphere and sub-lithospheric mantle that was contaminated with plume material. A three-dimensional geodynamic model for the westernmost Mediterranean is presented in which subduction of oceanic lithosphere is inferred to have caused continental-edge delamination of subcontinental lithosphere associated with upwelling of plume-contaminated sub-lithospheric mantle and lithospheric uplift. This process may operate worldwide in areas where subduction-related and intraplate-type magmatism are spatially and temporally associated