Endemic trees in a tropical biodiversity hotspot imperilled by an invasive tree

Non-native plants invade some tropical forests but there are few long-term studies of these invasions, and the consequences for plant richness and diversity are unclear. Repeated measurements of permanent plots in tropical montane rain forests in the Blue and John Crow Mountains National Park in Jamaica over 24 to 40 years coincided with invasion by a non-native tree, Pittosporum undulatum. By 2014, P. undulatum comprised, on average, 11.9% of stems ≥ 3 cm diameter and 10.4% of the basal area across 16 widespread plots within c. 250 ha of the forests. Across these plots, the more P. undulatum increased in basal area over 24 years, the greater the decline in local, plot-scale tree species richness, and the greater the reduction in the percentage of stems of endemic tree species. Plot-scale tree diversity (Shannon and Fisher\u27s alpha) also declined the more P. undulatum basal area increased, but beta diversity across the plots was not reduced. Declines in local-scale tree species diversity and richness as the invasion progresses is especially concerning because Jamaica is a global biodiversity hotspot. Native birds disperse P. undulatum seeds widely, and future hurricanes will probably further increase its invasion by reducing canopy cover and therefore promoting growth rates of its established shade-tolerant seedlings. Remedial action is needed now to identify forest communities with greatest endemism, and to protect them through a continuing programme of control and removal of P. undulatum

Data from: Interspecies interference and monitoring duration affect detection rates in chew cards

Pest monitoring methods should provide unbiased accurate estimates of pest densities and locations, while also minimizing time-in-field and costs. Recent pest mammal monitoring studies have found that chew cards are more effective than conventional mammal monitoring methods, but little experimental work has been done to determine optimal experimental duration or quantify the risks of saturation by one species biasing detections of other species. Here, we used chew cards in three sites within Awarua wetland (Southland, New Zealand) to investigate the optimal amount of time required to detect targeted pest species (rats, possums and mice), and to examine the potential of rats and possums to bias detection rates of other species. We found depressed detections of possums and rats where a contraspecific had been detected on a card, which is consistent with previous studies of a similar duration on interspecies interference. This experiment is the first to analyse the rates at which species detections accrue over the course of a survey, and we found rat detections lagged behind possums for the first four nights. We modelled the effect of survey duration and relative rat abundance on the likelihood of further possum detections. Duration and rat abundance interacted, meaning there are trade-offs to be considered with regard to duration: shorter durations may avoid the risk of saturation in areas of high pest density, but risk not sampling sparse or neophobic populations. Our data suggest that chew cards remain one of the most sensitive pest monitoring tools for rats and possums, compared to conventional methods such as tracking tunnels and wax tags. In areas of moderate pest densities, we suggest that a duration of five nights is optimal for detecting pests. However, in areas of high pest density the sensitivity of chew cards may render them unsuitable because of saturation and interspecies interference effects

Small mammal monitoring with chew cards - data and analysis

This zip folder contains the data and analysis code (in .R format) for three experiments conducted in Awarua wetland, Southland, New Zealand. Please read the readme file inside the folder, as this describes the folder structure and data files

Data from: Glyphosate redirects wetland vegetation trajectory following willow invasion

Aims: Aerially applied glyphosate is an economic tool to deal with large areas of invasive plants. However, there are few studies investigating non-target effects or rates of reinvasion, particularly over multi-year timeframes. The aims were to evaluate the effectiveness of aerial application of glyphosate for control of dense stands of the invasive grey willow Salix cinerea, and determine the vegetation trajectory over the subsequent two years. Location: Whangamarino Wetland, Waikato, New Zealand. Methods: A before-after control-impact (BACI) experiment was conducted in a Ramsar-listed wetland in New Zealand. Effects on S. cinerea cover, canopy light interception and non-target damage were monitored over a 7.1 ha experimental area prior to, and for two years following, aerial application of glyphosate. Vegetation classification, ordination, and species richness analyses were undertaken to describe community-level effects. Results: Aerial application of glyphosate to an established willow canopy was effective in reducing cover to < 5% on average for up to two years post-spray when assessed using 100 m2 vegetation survey plots. Smaller 1 m2 plots were more sensitive for detecting willow reinvasion, which was noted from one year post-spray. Collateral damage to non-target sub-canopy species was generally minimal, except for the native tree-fern Dicksonia squarrosa which showed marked reductions in cover and no recovery over the study period. Species richness was higher in sprayed plots post-spray and a shift towards a native Carex-dominated sedgeland community was detected. Conclusions: Aerial application of glyphosate to a dense canopy of mature willow was effective in reducing the cover and dominance of this invasive wetland tree species. Minimal collateral damage occurred, facilitating recovery and expansion of a native sedgeland community. The risk of secondary invasion did not eventuate, although exotic species richness spiked in the year following spraying. Sedgelands are susceptible to willow reinvasion via seed so longer-term trajectories will diverge depending on management intensity. Using currently available tools the rehabilitation options are either repeated cycles of herbicide application to redirect the trajectory from reinvasion back to short-statured sedgelands, or intensive initial management to establish an alternative, more resilient trajectory to native wetland forest

Glyphosate redirects wetland vegetation trajectory following willow invasion

Vegetation data collected to describe the effect of glyphosate in a Salix cinerea invaded wetland. See the README file in the zip folder for further detail

National Scale 3D Mapping of Soil pH Using a Data Augmentation Approach

Understanding the spatial variation of soil pH is critical for many different stakeholders across different fields of science, because it is a master variable that plays a central role in many soil processes. This study documents the first attempt to map soil pH (1:5 H2O) at high resolution (100 m) in New Zealand. The regression framework used follows the paradigm of digital soil mapping, and a limited number of environmental covariates were selected using variable selection, before calibration of a quantile regression forest model. In order to adapt the outcomes of this work to a wide range of different depth supports, a new approach, which includes depth of sampling as a covariate, is proposed. It relies on data augmentation, a process where virtual observations are drawn from statistical populations constructed using the observed data, based on the top and bottom depth of sampling, and including the uncertainty surrounding the soil pH measurement. A single model can then be calibrated and deployed to estimate pH a various depths. Results showed that the data augmentation routine had a beneficial effect on prediction uncertainties, in particular when reference measurement uncertainties are taken into account. Further testing found that the optimal rate of augmentation for this dataset was 3-fold. Inspection of the final model revealed that the most important variables for predicting soil pH distribution in New Zealand were related to land cover and climate, in particular to soil water balance. The evaluation of this approach on those validation sites set aside before modelling showed very good results (R2=0.65, CCC=0.79, RMSE=0.54), that significantly out-performed existing soil pH information for the country

Palynology and the Ecology of the New Zealand Conifers

The New Zealand conifers (20 species of trees and shrubs in the Araucariaceae, Podocarpaceae, and Cupressaceae) are often regarded as ancient Gondwanan elements, but mostly originated much later. Often thought of as tall trees of humid, warm forests, they are present throughout in alpine shrublands, tree lines, bogs, swamps, and in dry, frost-prone regions. The tall conifers rarely form purely coniferous forest and mostly occur as an emergent stratum above evergreen angiosperm trees. During Maori settlement in the thirteenth century, fire-sensitive trees succumbed rapidly, most of the drier forests being lost. As these were also the more conifer-rich forests, ecological research has been skewed toward conifer dynamics of forests wetter and cooler than the pre-human norm. Conifers are well represented in the pollen record and we here we review their late Quaternary history in the light of what is known about their current ecology with the intention of countering this bias. During glacial episodes, all trees were scarce south of c. 40° S, and extensive conifer-dominant forest was confined to the northern third of the North Island. Drought- and cold-resistant Halocarpus bidwillii and Phyllocladus alpinus formed widespread scrub in the south. During the deglacial, beginning 18,000 years ago, tall conifers underwent explosive spread to dominate the forest biomass throughout. Conifer dominance lessened in favor of angiosperms in the wetter western lowland forests over the Holocene but the dryland eastern forests persisted largely unchanged until settlement. Mid to late Holocene climate change favored the more rapidly growing Nothofagaceae which replaced the previous conifer-angiosperm low forest or shrubland in tree line ecotones and montane areas. The key to this dynamic conifer history appears to be their bimodal ability to withstand stress, and dominate on poor soils and in cool, dry regions but, in wetter, warmer locations, to slowly grow thorough competing broadleaves to occupy an exposed, emergent stratum where their inherent stress resistance ensures little effective angiosperm competition