A Structural Classification of Australian Vegetation Using ICESat/GLAS, ALOS PALSAR and Landsat Sensor Data

Australia has historically used structural descriptors of height and cover to characterize, differentiate, and map the distribution of woody vegetation across the continent but no national satellite-based structural classification has been available. In this study, we present a new 30-m spatial resolution reference map of Australian forest and woodland structure (height and cover), with this generated by integrating Landsat Thematic Mapper (TM) and Enhanced TM, Advanced Land Observing Satellite (ALOS) Phased Arrayed L-band Synthetic Aperture Radar (PALSAR) and Ice, Cloud, and land Elevation (ICESat),and Geoscience Laser Altimeter System (GLAS) data. ALOS PALSAR and Landsat-derived Foliage Projective Cover (FPC) were used to segment and classify the Australian landscape. Then, from intersecting ICESat waveform data, vertical foliage profiles and height metrics (e.g., 95% percentile height, mean height and the height to maximum vegetation density) were extracted for each of the classes generated. Within each class, and for selected areas, the variability in ICESat profiles was found to be similar with differences between segments of the same class attributed largely to clearance or disturbance events. ICESat metrics and profiles were then assigned to all remaining segments across Australia with the same class allocation. Validation against airborne LiDAR for a range of forest structural types indicated a high degree of correspondence in estimated height measures. On this basis, a map of vegetation height was generated at a national level and was combined with estimates of cover to produce a revised structural classification based on the scheme of the Australian National Vegetation Information System (NVIS). The benefits of integrating the three datasets for segmenting and classifying the landscape and retrieving biophysical attributes was highlighted with this leading the way for future mapping using ALOS-2 PALSAR-2, Landsat/Sentinel-2, Global Ecosystem Dynamics Investigation (GEDI), and ICESat-2 LiDAR data. The ability to map across large areas provides considerable benefits for quantifying carbon dynamics and informing on biodiversity metrics

Multi-resolution time series imagery for forest disturbance and regrowth monitoring in Queensland, Australia

High spatio-temporal resolution optical remote sensing data provide unprecedented opportunities to monitor and detect forest disturbance and loss. To demonstrate this potential, a 12-year time series (2000 to 2011) with an 8-day interval of a 30m spatial resolution data was generated by the use of the Spatial and Temporal Adaptive Reflectance Fusion Model (STARFM) with Landsat sensor observations and Moderate Resolution Imaging Spectroradiometer (MODIS) data as input. The time series showed a close relationship over homogeneous forested and grassland sites, with r values of 0.99 between Landsat and the closest STARFM simulated data; and values of 0.84 and 0.94 between MODIS and STARFM. The time and magnitude of clearing and re-clearing events were estimated through a phenological breakpoint analysis, with 96.2% of the estimated breakpoints of the clearing event and 83.6% of the re-clearing event being within 40days of the true clearing. The study highlights the benefits of using these moderate resolution data for quantifying and understanding land cover change in open forest environments

A Python-Based Open Source System for Geographic Object-Based Image Analysis (GEOBIA) Utilizing Raster Attribute Tables

A modular system for performing Geographic Object-Based Image Analysis (GEOBIA), using entirely open source (General Public License compatible) software, is presented based around representing objects as raster clumps and storing attributes as a raster attribute table (RAT). The system utilizes a number of libraries, developed by the authors: The Remote Sensing and GIS Library (RSGISLib), the Raster I/O Simplification (RIOS) Python Library, the KEA image format and TuiView image viewer. All libraries are accessed through Python, providing a common interface on which to build processing chains. Three examples are presented, to demonstrate the capabilities of the system: (1) classification of mangrove extent and change in French Guiana; (2) a generic scheme for the classification of the UN-FAO land cover classification system (LCCS) and their subsequent translation to habitat categories; and (3) a national-scale segmentation for Australia. The system presented provides similar functionality to existing GEOBIA packages, but is more flexible, due to its modular environment, capable of handling complex classification processes and applying them to larger datasets

Radiative Transfer Modeling of a Coniferous Canopy Characterized by Airborne Remote Sensing

Solar radiation beneath a forest canopy can have large spatial variations, but this is frequently neglected in radiative transfer models for large-scale applications. To explicitly model spatial variations in subcanopy radiation, maps of canopy structure are required. Aerial photography and airborne laser scanning are used to map tree locations, heights, and crown diameters for a lodgepole pine forest in Colorado as inputs to a spatially explicit radiative transfer model. Statistics of subcanopy radiation simulated by the model are compared with measurements from radiometer arrays, and scaling of spatial statistics with temporal averaging and array size is discussed. Efficient parameterizations for spatial averages and standard deviations of subcanopy radiation are developed using parameters that can be obtained from the model or hemispherical photography

An evaluation of the ALOS PALSAR L-band backscatter—Above ground biomass relationship Queensland, Australia: Impacts of surface moisture condition and vegetation structure

Focusing on woody vegetation in Queensland, Australia, the study aimed to establish whether the relationship between Advanced Land Observing Satellite (ALOS) Phased Array L-band SAR (PALSAR) HH and HV backscattering coefficients and above ground biomass (AGB) was consistent within and between structural formations (forests, woodlands and open woodlands, including scrub). Across these formations, 2781 plot-based measurements (from 1139 sites) of tree diameters by species were collated, from which AGB was estimated using generic allometric equations. For Queensland, PALSAR fine beam dual (FBD) 50 m strip data for 2007 were provided through the Japanese Space Exploration Agency’s (JAXA) Kyoto and Carbon (K&C) Initiative, with up to 3 acquisitions available for each Reference System for Planning (RSP) paths. When individual strips acquired over Queensland were combined, ‘banding’ was evident within the resulting mosaics, with this attributed to enhanced L-band backscatter following rainfall events in some areas. Reference to Advanced Microwave Scanning Radiometer-EOS (AMSR-E) data indicated that strips with enhanced L-band backscatter corresponded to areas with increased effective vegetation water content kg m and, to a lesser extent, soil moisture g cm . Regardless of moisture conditions, L-band HV topographically normalized backscattering intensities backscatter increased asymptotically with AGB, with the saturation level being greatest for forests and least for open woodlands. However, under conditions of relative maximum surface moisture, L-band HV and HH was enhanced by as much as 2.5 and 4.0 dB respectively, particularly for forests of lower AGB, with this resulting in an overall reduction in dynamic range. The saturation level also reduced at L-band HH for forests and woodlands but remained similar for open woodlands. Differences in the rate of increase in both L-band HH and HV with AGB were observed between forests and the woodland categories (for both relatively wet and dry conditions) with these attributed, in part, to differences in the size class distribution and stem density between non-remnant (secondary) forests and remnant woodlands of lower AGB. The study concludes that PALSAR data acquired when surface moisture and rainfall are minimal allow better estimation of the AGB of woody vegetation and that retrieval algorithms ideally need to consider differences in surface moisture conditions and vegetation structure

An Approach to Mapping Forest Growth Stages in Queensland, Australia through Integration of ALOS PALSAR and Landsat Sensor Data

Whilst extensive clearance of forests in the eastern Australian Brigalow Belt Bioregion (BBB) has occurred since European settlement, appropriate management of those that are regenerating can facilitate restoration of biomass (carbon) and biodiversity to levels typical of relatively undisturbed or remnant formations. However, maps of forests are different stages of regeneration are needed to facilitate restoration planning, including prevention of further re-clearing. Focusing on the Tara Downs subregion of the BBB and on forests with brigalow (Acacia harpophylla) as a component, this research establishes a method for differentiating and mapping early, intermediate and remnant growth stages from Japan Aerospace Exploration Agency (JAXA) Advanced Land Observing Satellite (ALOS) Phased-Array L-band Synthetic Aperture Radar (PALSAR) Fine Beam Dual (FBD) L-band HH- and HV-polarisation backscatter and Landsat-derived Foliage Projective Cover (FPC). Using inventory data collected from 74 plots, located in the Tara Downs subregion, forests were assigned to one of three regrowth stages based on their height and cover relative to that of undisturbed stands. The image data were then segmented into objects with each assigned to a growth stage by comparing the distributions of L-band HV and HH polarisation backscatter and FPC to that of reference distributions using a z-test. Comparison with independent assessments of growth stage, based on time-series analysis of aerial photography and SPOT images, established an overall accuracy of > 70%, with this increasing to 90% when intermediate regrowth was excluded and only early-stage regrowth and remnant classes were considered. The proposed method can be adapted to respond to amendments to user-definitions of growth stage and, as regional mosaics of ALOS PALSAR and Landsat FPC are available for Queensland, has application across the state

Mapping forest growth and degradation stage in the Brigalow Belt Bioregion of Australia through integration of ALOS PALSAR and Landsat-derived foliage projective cover data

Differentiation of forest growth stages through classification of single date or time-series of Landsat sensor data is limited because of insensitivity to their three-dimensional structure. This study therefore evaluated the benefits of integrating the Advanced Land Observing Satellite (ALOS) Phased Array L-band Synthetic Aperture Radar (PALSAR) L-band HH and HV polarisation response from the woody components of vegetation with Landsat-derived foliage projective cover (FPC). Focus was on 12 regional ecosystems (REs) distributed across the Brigalow Belt Bioregion (BRB) of Queensland, Australia, where different stages of growth dominated by brigalow (Acacia harpophylla) were widespread. From remnant areas of brigalow-dominated forests mapped previously for each RE by the Queensland Herbarium through field visits and interpretations of aerial imagery, frequency distributions of all three channels were extracted and compared to those of image segments generated using FPC and PALSAR data. For woody vegetation (with an FPC threshold of ≥ 9%) outside of the remnant areas, mature (non-remnant) forests were associated with segments where the HH and HV backscatter thresholds were within one standard deviation of the mean extracted for remnant forest. Early-stage regrowth was differentiated using an L-band HH threshold o

A large fraction of HLA class I ligands are proteasome-generated spliced peptides

The proteasome generates the epitopes presented on human leukocyte antigen (HLA) class I molecules that elicit CD8(+) T cell responses. Reports of proteasome-generated spliced epitopes exist, but they have been regarded as rare events. Here, however, we show that the proteasome-generated spliced peptide pool accounts for one-third of the entire HLA class I immunopeptidome in terms of diversity and one-fourth in terms of abundance. This pool also represents a unique set of antigens, possessing particular and distinguishing features. We validated this observation using a range of complementary experimental and bioinformatics approaches, as well as multiple cell types. The widespread appearance and abundance of proteasome-catalyzed peptide splicing events has implications for immunobiology and autoimmunity theories and may provide a previously untapped source of epitopes for use in vaccines and cancer immunotherapy