39 research outputs found

    Selection Signatures in Worldwide Sheep Populations

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    The diversity of populations in domestic species offers great opportunities to study genome response to selection. The recently published Sheep HapMap dataset is a great example of characterization of the world wide genetic diversity in sheep. In this study, we re-analyzed the Sheep HapMap dataset to identify selection signatures in worldwide sheep populations. Compared to previous analyses, we made use of statistical methods that (i) take account of the hierarchical structure of sheep populations, (ii) make use of linkage disequilibrium information and (iii) focus specifically on either recent or older selection signatures. We show that this allows pinpointing several new selection signatures in the sheep genome and distinguishing those related to modern breeding objectives and to earlier post-domestication constraints. The newly identified regions, together with the ones previously identified, reveal the extensive genome response to selection on morphology, color and adaptation to new environments

    Genetic testing for TMEM154 mutations associated with lentivirus susceptibility in sheep

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    Stefan Hiendleder is a member of the International Sheep Genomics ConsortiumIn sheep, small ruminant lentiviruses cause an incurable, progressive, lymphoproliferative disease that affects millions of animals worldwide. Known as ovine progressive pneumonia virus (OPPV) in the U.S., and Visna/Maedi virus (VMV) elsewhere, these viruses reduce an animal’s health, productivity, and lifespan. Genetic variation in the ovine transmembrane protein 154 gene (TMEM154) has been previously associated with OPPV infection in U.S. sheep. Sheep with the ancestral TMEM154 haplotype encoding glutamate (E) at position 35, and either form of an N70I variant, were highly-susceptible compared to sheep homozygous for the K35 missense mutation. Our current overall aim was to characterize TMEM154 in sheep from around the world to develop an efficient genetic test for reduced susceptibility. The average frequency of TMEM154 E35 among 74 breeds was 0.51 and indicated that highly-susceptible alleles were present in most breeds around the world. Analysis of whole genome sequences from an international panel of 75 sheep revealed more than 1,300 previously unreported polymorphisms in a 62 kb region containing TMEM154 and confirmed that the most susceptible haplotypes were distributed worldwide. Novel missense mutations were discovered in the signal peptide (A13V) and the extracellular domains (E31Q, I74F, and I102T) of TMEM154. A matrix-assisted laser desorption/ionization–time-of flight mass spectrometry (MALDI-TOF MS) assay was developed to detect these and six previously reported missense and two deletion mutations in TMEM154. In blinded trials, the call rate for the eight most common coding polymorphisms was 99.4% for 499 sheep tested and 96.0% of the animals were assigned paired TMEM154 haplotypes (i.e., diplotypes). The widespread distribution of highly-susceptible TMEM154 alleles suggests that genetic testing and selection may improve the health and productivity of infected flocks.Michael P. Heaton, Theodore S. Kalbfleisch, Dustin T. Petrik, Barry Simpson, James W. Kijas, Michael L. Clawson, Carol G. Chitko-McKown, Gregory P. Harhay, Kreg A. Leymaster, the International Sheep Genomics Consortiu

    Development of Utah tar sands--a status report

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    reportThe hydrocarbon resource locked in Utah's tar sands has been estimated to be in excess of 25 billion barrels. Tar sands, known variously as oil sands, bituminous sandstone, or oil-impregnated sandstone, cannot be recovered by conventional primary or secondary petroleum recovery techniques because of the high viscosity of the bitumen. Viscosities of 101 to 10'1 poise are common. Yet, despite its inaccessibility and heavy, asphaltic appearance, tar sand bitumen is convertible in high yields into valuable liquid and gaseous fuels. The technology is currently being developed at the University of Utah and other research laboratories which will afford economical recovery, processing and utilization of Utah's tar sands. This article is an overview of the current state of research and development of this important natural resource

    Economic evaluation of oil shale and tar sands resources located in the state of Utah: Phase 1

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    reportManaging public lands for maximum social benefit is becoming an increasingly complex task. The growing need for domestically produced mineral raw materials and energy, and the conflicting interests over the use of public lands, have added new dimensions to the management issues. This report covers the first phase of a longterm program initiated by the Division of State Lands to improve their capability to evaluate the tar sand and oil shale resources in Utah. The scope of this phase of the study was limited to the examination and analysis of existing information and to the development models for data processing and resource evaluation. The study has been effective in identifying problem areas and demonstrating the potential value of the proposed systems for the management of state lands. The more important findings and conclusions are summarized below

    Upgrading of bitumen by hydropyrolysis -- A process for low coke and high syncrude yields

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    BookThe Department of Fuels Engineering at the University of Utah has been conducting research on the chemistry and engineering of hydropyrolysis for several years. It was previously observed (Ramakrishnan, 1978; Shabtai et al., 1979) that under certain reaction conditions hydrocarbon species undergo cracking reactions with no evidence of products possessing molecular weights greater than those of the starting material. In work involving heavy feedstocks with significant (>10%) carbon residue properties, and using a coiled tube reactor, it was further observed (Bunger, 1979; Bunger et al., 1978,1981) that conversion to gaseous and liquid products with yields greater than 99% was possible. The general conditions that result in these yields are 450-600°C, 1200-2000 psig H2, and 1-30 sec residence times. The prospect of developing a noncataly tic process for conversion of heavy oils and bitumens, which also may contain a high content of metals, was very attractive

    Shale oil value enhancement research - Quarterly report: April 1 - June 30, 1995

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    reportA review of the marketing, compositional analysis, and process data has pointed to a simplification of the process scheme envisaged for the phase-II continuous process work. This translates into a higher probability of success, both for the R&D and the likelihood of securing an industrial partner for future commercialization.. The phase-II PDU construction work is well-along and will be completed in the next quarter. The high efficiency distillation unit is complete and the liquid-liquid extraction unit is operable at ambient temperature and pressure conditions. In the last quarter, JWBA experienced a personnel change. Dr. Prasad Devineni who was handling most of the information gathering including market research took a job with a chemical marketing consulting firm. In his place we hired Dr. Chung-Hsi (Jesse) Tsai who has extensive experience in process development. His services will greatly enhance the productivity in phase-II. We also commissioned the consulting services of Dr. Geoff Dolbear to assist in the industrial liaison. We also employed two chemistry students for work over the summer and possibly into the school year. The current team is well-suited for the forthcoming tasks of running the PDlPs and preparing samples for introduction to potential buyers and partners
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