Comparative Phylogeography of Ethiopian anurans: Impact of the Great Rift Valley and Pleistocene Climate Change

Background: The Ethiopian highlands are a biodiversity hotspot, split by the Great Rift Valley into two distinct systems of plateaus and mountains. The Rift Valley is currently hot and dry and acts as a barrier to gene flow for highland-adapted species. It is however unlikely that the conditions in the Rift were inhospitable to highland species during the entire Pleistocene. To assess the significance of the Ethiopian Rift as a biogeographic barrier as well as the impact Pleistocene climatic changes have had on the evolution of Ethiopian organisms, we performed phylogeographic analyses and developed present and past niche models on seven anuran species with different elevational and ecological preferences. Results: We found that highland species on the east and the west sides of the Rift are genetically differentiated and have not experienced any detectable gene flow for at least 0.4 my. In contrast, species found at elevations lower than 2500 m do not show any population structure. We also determined that highland species have lower effective population sizes than lowland species, which have experienced a large, yet gradual, demographic expansion, starting approximately half a million year ago. Conclusions: The pattern we report here is consistent with the increasingly warmer and drier conditions of the Pleistocene in East Africa, which resulted in the expansion of savanna, the fragmentation of forests and the shrinking of highland habitats. Climatic niche models indicated that the Rift is currently non suitable for most of the studied species, but it could have been a more permeable barrier during the Last Glacial Maximum. However, considering the strong genetic structure of highland species, we hypothesize that the barrier mechanisms at the Rift are not only climatic but also topographical

Разработка и применение современных лабораторных методов в эпидемиологическом мониторинге, диагностики и лечении энтеровирусных инфекций

У роботі проведена порівняльна оцінка специфічності й чутливості тест-системи ПЛР, зі специфічним праймером до ДНК 207 п.н. 5'-нетрансльованої області генома энтеровируса для всіх типів ентеровірусів (крім вірусу поліомієліту) у порівнянні із класичним культуральним методом. А також методологічний підхід спільного використання вищеописаної реакції ПЦР із визначенням антитіл класу Іg до вірусів Коксаки й ЕСНО у системі ІФА діагностики, розробленої авторами, і спектр застосування розробленого комплекс.In work the estimation of specificity and sensitivity of test system PTSR, with specific primers to DNA 207 n.n is spent comparative. 5 '-not broadcast areas генома an enterovirus for all types of enteroviruses (except a poliomyelitis virus) in comparison with classical the virology a method. And also the methodological approach of sharing of above described reaction PCR with definition of antibodies of a class ІgG to viruses Cocsaki and ЕСНО in system IFA of diagnostics developed by authors, and a spectrum of application of the developed complex

Additional file 1: Table S1. of Comparative Phylogeography of Ethiopian anurans: impact of the Great Rift Valley and Pleistocene climate change

Samples used in this study, including collecting localities and GenBank accession numbers. (XLSX 51 kb