Partially ¹³C-labeled mouse tissue as reference for LC-MS based untargeted metabolomics

The inclusion of stable isotope-labeled reference standards in the sample is an established method for the detection and relative quantification of metabolic features in untargeted metabolomics. In order to quantify as many metabolites as possible, the reference should ideally include the same metabolites in their stable isotope-labeled form as the sample under investigation. We present here an attempt to use partially C-13-labeled mouse material as internal standard for relative metabolite quantification of mouse and human samples in untargeted metabolomics. We fed mice for 14 days with a C-13-labeled Ralstonia eutropha based diet. Tissue and blood amino acids from these mice showed C-13 enrichment levels that ranged from 6% to 75%. We used MetExtract II software to automatically detect native and labeled peak pairs in an untargeted manner. In a dilution series and with the implementation of a correction factor, partially C-13-labeled mouse plasma resulted in accurate relative quantification of human plasma amino acids using liquid chromatography coupled to mass spectrometry, The coefficient of variation for the relative quantification is reduced from 27% without internal standard to 10% with inclusion of partially C-13-labeled internal standard. We anticipate the method to be of general use for the relative metabolite quantification of human specimens

Downy mildew symptoms on grapevines can be reduced by volatile organic compounds of resistant genotypes

Volatile organic compounds (VOCs) play a crucial role in the communication of plants with other organisms and are possible mediators of plant defence against phytopathogens. Although the role of non-volatile secondary metabolites has been largely characterised in resistant genotypes, the contribution of VOCs to grapevine defence mechanisms against downy mildew (caused by Plasmopara viticola) has not yet been investigated. In this study, more than 50 VOCs from grapevine leaves were annotated/identifed by headspace-solid-phase microextraction gas chromatography-mass spectrometry analysis. Following P. viticola inoculation, the abundance of most of these VOCs was higher in resistant (BC4, Kober 5BB, SO4 and Solaris) than in susceptible (Pinot noir) genotypes. The post-inoculation mechanism included the accumulation of 2-ethylfuran, 2-phenylethanol, β-caryophyllene, β-cyclocitral, β-selinene and trans-2-pentenal, which all demonstrated inhibitory activities against downy mildew infections in water suspensions. Moreover, the development of downy mildew symptoms was reduced on leaf disks of susceptible grapevines exposed to air treated with 2-ethylfuran, 2-phenylethanol, β-cyclocitral or trans-2-pentenal, indicating the efcacy of these VOCs against P. viticola in receiver plant tissues. Our data suggest that VOCs contribute to the defence mechanisms of resistant grapevines and that they may inhibit the development of downy mildew symptoms on both emitting and receiving tissues

Identification and activity testing of volatile organic compounds (VOCs) found in different grapevine genotypes in response to downy mildew infection

Vitis vinifera is susceptible to several pathogens including Plasmopara viticola, the causal agent of downy mildew (1). American grapevine species are resistant or tolerant to P. viticola and breeding programs have introduced resistance traits to susceptible cultivars. Although grapevine resistance mechanisms against downy mildew have been widely characterized in resistant genotypes (1), the possible contribution of volatile organic compounds (VOCs) was not yet investigated. The aim of this work was the characterization of VOCs produced by resistant and susceptible grapevine genotypes in response to P. viticola inoculation, in order to identify VOCs associated to grapevine resistance against downy mildew. The susceptible V. vinifera cultivar Pinot noir, and the resistant genotypes Kober 5BB, SO4, BC4 and Solaris were grown under greenhouse conditions and they were subsequently inoculated with P. viticola. Leaves were harvested immediately before (T0) and six days (T1) after inoculation, and the lower disease severity in resistant genotypes as compared with Pinot noir was confirmed. A headspace-solid-phase microextraction-gas chromatography-mass spectrometry (HS-SPME/GC-MS) approach was used to analyze VOCs from the five studied genotypes. GC-MS chromatograms showed specific VOC emission profiles of the four resistant genotypes as compared with Pinot noir at T1. VOCs specifically found in resistant genotypes were selected, and pure compounds were tested against P. viticola sporangia by leaf disk assays. Particularly, four sesquiterpenes, one C5 aldehyde, one terpenoid, one alcohol and one heterocyclic compound were tested in liquid suspension with P. viticola sporangia and significantly reduced downy mildew symptoms on Pinot noir leaf disks. Moreover, four of these VOCs were tested in air volume and displayed significant reduction of downy mildew symptoms demonstrating that VOCs could play an important role in the resistance against downy mildew by direct toxicity against P. viticola sporangia

Identification of volatile organic compounds emitted by different grapevine genotypes in response to downy mildew infection

Vitis vinifera is susceptible to several pathogens including Plasmopara viticola, the causal agent of downy mildew. American grapevine species are resistant or tolerant to P. viticola and breeding programs have introduced resistance traits to susceptible cultivars. Although grapevine resistance to P. viticola has been widely characterized in resistant genotypes, the possible contribute of volatile organic compounds (VOCs) was not yet investigated. The aim of this work was the characterization of VOCs produced by resistant and susceptible genotypes in response to P. viticola inoculation, in order to identify VOCs associated to grapevine resistance. The susceptible V. vinifera cultivar Pinot noir, and the resistant genotypes Kober 5BB, SO4, BC4 and Solaris were grown under greenhouse conditions and they were subsequently inoculated with P. viticola. Leaves were harvested immediately before (0 dpi) and six days (6 dpi) after inoculation, and the lower disease severity in resistant genotypes as compared with Pinot noir was confirmed. A solid-phase microextraction-gas chromatography-mass spectrometry approach (SPME/GC-MS) was used to analyze VOCs emitted by the five genotypes studied. GC-MS chromatograms showed specific VOC emission profiles of the four resistant genotypes as compared with Pinot noir at 6 dpi. VOCs specifically emitted by resistant genotypes were then selected, and pure compounds were tested against P. viticola by leaf discs assays. Particularly, three sesquiterpenes, two aldehydes and one heterocyclic compound significantly reduced downy mildew severity on Pinot noir, demonstrating that VOCs could play an important role in the resistance against downy mildew by direct toxicity against P. viticola

Identification and functional characterization of grapevine volatile organic compounds for the sustainable control of downy mildew

Introduction Grapevine (Vitis vinifera) is one of the most widely cultivated fruit crops and is susceptible to various pathogens, such as Plasmopara viticola that causes downy mildew (Gessler et al., 2011). Wild grapevine species are resistant to P. viticola and breeding programs have introduced resistance traits to susceptible cultivars. Plant defence responses are based on different mechanisms and volatile organic compounds (VOCs) play a crucial role in the communication between plants and other organisms. Although the emission of VOCs upon P. viticola inoculation was shown in resistant grapevine genotypes (Algarra Alarcon et al., 2015), the molecular structure and functional role of these molecules in the grapevine defence was not yet investigated. The aim of this study was to identify and functionally characterize VOCs produced by resistant and susceptible grapevine genotypes in response to P. viticola in order to further develop innovative methods for the sustainable control of downy mildew. Material and methods The susceptible V. vinifera cultivar Pinot noir and four resistant genotypes (Kober 5BB, SO4, BC4 and Solaris) were grown for three months under greenhouse conditions. Plants were inoculated with a suspension of P. viticola sporangia as previously described (Perazzolli et al., 2012). Downy mildew severity was assessed at seven days after inoculation according to the OIV-452 descriptor and scores from 1 (the most susceptible) to 9 (the totally resistant) were assigned (Bellin et al., 2009). Leaf samples were collected before (T0) and six days (T1) after P. viticola inoculation and five replicates (plants) were analysed for each genotype at each time point. The complete experiment was carried out twice. Each sample was frozen in liquid nitrogen and ground to a fine powder. Leaf powder was weighed into 20 mL headspace vials and analysed by headspace solid phase microextraction-gas chromatography-mass spectrometry (HS-SPME/GC-MS; Weingart, et al. 2012). Eight of the identified VOCs were selected according to their emission profiles and pure compounds were tested against P. viticola by leaf disk assays. Downy mildew development was assessed on leaf disks at one, two and six days post inoculation (dpi) by aniline blue staining. Results and discussion VOC profiles measured by HS-SPME/GC-MS analysis were consistent between the two experiments. Terpenes, isoprenoids, aldehydes, alcohols, esters and heterocyclic compounds were found in both experiments in all five tested genotypes . In general, after P. viticola treatment (T1) the abundance of the detected VOCs was higher in resistant genotypes as compared with Pinot noir. Interestingly, the relative induction of VOC levels was found to be significantly higher in resistant genotypes compared to only small changes in Pinot noir. Compared to Pinot noir, treatment with P. viticola resulted in two sesquiterpenes being more abundant in all five resistant genotypes, while three other sesquiterpenes showed a higher abundance in three resistant genotypes (BC4, Kober 5BB and Solaris). At T1, Kober 5BB and Solaris showed also a higher abundance of one heterocyclic compound and one isoprenoid as compared with Pinot noir. Finally, the abundance of a C5 aldehyde was higher in Kober 5BB as compared with Pinot noir at T1. These eight pure VOCs were tested against P. viticola in liquid suspension and in air volume. The eight VOCs impaired the development of downy mildew symptoms at dosages that ranged from 0.1 to 10.0 g/L in liquid suspension. However, five of them also showed severe phytotoxic effects on leaf disks at the dosage of 10.0 g/L. Four pure VOCs (one isoprenoid, one alcohol, one C5 aldehyde and one heterocyclic compound) significantly reduced downy mildew symptoms at the dosage of 20.0 mg/L in air volume, when each VOC was applied to a filter paper disk and placed on the lid of the Petri dish. Microscope observations with aniline blue staining revealed marked morphological changes in VOC-treated leaf disks after P. viticola inoculation. The number of pathogen structures was reduced in leaf disks treated with one isoprenoid, one alcohol and one heterocyclic compound as compared to control disks at one, two and six dpi. Moreover, no P. viticola structures were visible on leaf disks treated with the C5 aldehyde. This aldehyde and one isoprenoid were also able to reduce the diameter of P. viticola sporangia. In conclusion, downy mildew increased the production of VOCs (terpenes, isoprenoid, alcohols, aldehydes and heterocyclic compounds) in resistant but not in the susceptible genotype and these molecules are associated to the activation of grapevine defence mechanisms. Moreover, VOCs of resistant genotypes have the porential to contribute to grapevine resistance and significantly reduced downy mildew symptoms on susceptible leaf disks, indicating that they can be further developed as sustainable control molecules

Identification by HS-SPME/GC-MS and activity testing of Trichoderma spp. volatile organic compounds against grapevine downy mildew

Downy mildew, caused by the biotrophic oomycete Plasmopara viticola, is one of the most destructive diseases of the grapevine [1]. Fungi of the genus Trichoderma are economically important biocontrol agents since they play a crucial role in plantgrowth promotion, mycoparasitism of plant pathogens and priming of plant defence. Trichoderma spp. also release a high diversity of volatile organic compounds (VOCs), which play a decisive role against plant pathogens [2]. However, the possible contribution of Trichoderma VOCs in antagonistic processes against grapevine downy mildew has not yet been investigated. In this work, VOC emission profiles of three Trichoderma strains belonging to T. asperellum, T. atroviride and T. harzianum were analysed using headspace-solidphase microextraction gas chromatography-mass spectrometry (HS-SPME/GC-MS). Total ion current chromatograms were processed by an open source software [3], and statistical analysis on the obtained raw data was carried out using an in-house R-script. VOCs emitted by the Trichoderma strains at specific time-points were selected, and pure compounds were tested against downy mildew by leaf disks assays on susceptible grapevines. The development of downy mildew symptoms was reduced on leaf disks exposed to air treated with two sesquiterpenes, one hydrocarbon, or one heterocyclic compound, indicating the efficacy of these VOCs against downy mildew in plant tissues. Our data suggest that VOCs emitted by the Trichoderma strains under study can effectively be detected and identified by HS-SPME/GC-MS, and can inhibit the development of downy mildew symptoms on susceptible grapevine

Identification of volatile organic compounds in different grapevine genotypes after inoculation with Plasmopara viticola

The grapevine Vitis vinifera cv Pinot noir is susceptible to several pathogens including Plasmopara viticola that is the causal agent of downy mildew [1]. Hybrids of V. berlandieri and V. riparia (SO4 and Kober 5BB) and hybrids of Muscadinia rotundifolia and V. vinifera (BC4) and others such as Solaris are resistant or tolerant to downy mildew. It has been demonstrated recently [2] that resistant in vitro hybrids SO4 and Kober 5BB emit volatile organic compounds (VOCs) in response to P. viticola infection. In particular, the most interesting class of VOCs constitutes terpenoids (mono- and sesquiterpenes) emitted by the resistant cultivars, whereas for Pinot noir no terpenes have been detected under the tested conditions. In the present study we have used gas chromatography coupled with mass spectrometry (GC-MS) to study in more detail the chemical identity of the compounds produced by selected plants of the five genotypes Pinot noir, Kober 5BB, SO4, BC4 and Solaris. All the genotypes were cultured in the greenhouse and leaves were harvested immediately (0 dpi) and six (6 dpi) days after the inoculation with P. viticola. All samples were immediately frozen and homogenized under cooled conditions. VOCs were extracted by using solid phase microextraction (SPME) and analyzed by GC-MS. Mass spectral deconvolution and annotation / identification of volatile compounds was based on comparison of mass spectra and retention indices with reference values and performed by Metabolite Detector software [3]. Preliminary results showed increased levels compared to day zero of sesquiterpenes in resistant cultivars six days after inoculation, demonstrating that terpenes could play an important role in plant resistance against downy mildew in resistant genotypes. [1] C. Gessler, I. Pertot, M. Perazzolli. (2011). Plasmopara viticola: a review of knowledge on downy mildew of grapevine and effective disease management. Phytopathologia Mediterranea, 50, p. 3-44 [2] A. Algarra Alarcon, V. Lazazzara, L. Cappellin, P. L. Bianchedi, R. Schuhmacher, G. Wohlfahrt, I. Pertot, F. Biasioli and M. Perazzolli. (2015). Emission of volatile sesquiterpenes and monoterpenes in grapevine genotypes following Plasmopara viticola inoculation in vitro. Journal of Mass Spectrometry, 50, p. 1013–1022 [3] K. Hiller, J. Hangebrauk, C. Jäger, J. Spura, K. Schreiber, D. Schomburg. (2009) MetaboliteDetector: comprehensive analysis tool for targeted and nontargeted GC/MS based metabolome analysis. Analytical Chemistry, 81(9), p. 3429-343