Mapping tropical disturbed forests using multi-decadal 30 m optical satellite imagery

Tropical disturbed forests play an important role in global carbon sequestration due to their rapid post-disturbance biomass accumulation rates. However, the accurate estimation of the carbon sequestration capacity of disturbed forests is still challenging due to large uncertainties in their spatial distribution. Using Google Earth Engine (GEE), we developed a novel approach to map cumulative disturbed forest areas based on the 27-year time-series of Landsat surface reflectance imagery. This approach integrates single date features with temporal characteristics from six time-series trajectories (two Landsat shortwave infrared bands and four vegetation indices) using a random forest machine learning classification algorithm. We demonstrated the feasibility of this method to map disturbed forests in three different forest ecoregions (seasonal, moist and dry forest) in Mato Grosso, Brazil, and found that the overall mapping accuracy was high, ranging from 81.3% for moist forest to 86.1% for seasonal forest. According to our classification, dry forest ecoregion experienced the most severe disturbances with 41% of forests being disturbed by 2010, followed by seasonal forest and moist forest ecoregions. We further separated disturbed forests into degraded old-growth forests and post-deforestation regrowth forests based on an existing post-deforestation land use map (TerraClass) and found that the area of degraded old-growth forests was up to 62% larger than the extent of post-deforestation regrowth forests, with 18% of old-growth forests actually being degraded. Application of this new classification approach to other tropical areas will provide a better constraint on the spatial extent of disturbed forest areas in Tropics and ultimately towards a better understanding of their importance in the global carbon cycle

Model parameterization to simulate and compare the PAR absorption potential of two competing plant species

Mountain pastures dominated by the pasture grass Setaria sphacelata in the Andes of southern Ecuador are heavily infested by southern bracken (Pteridium arachnoideum), a major problem for pasture management. Field observations suggest that bracken might outcompete the grass due to its competitive strength with regard to the absorption of photosynthetically active radiation (PAR). To understand the PAR absorption potential of both species, the aims of the current paper are to (1) parameterize a radiation scheme of a two-big-leaf model by deriving structural (LAI, leaf angle parameter) and optical (leaf albedo, transmittance) plant traits for average individuals from field surveys, (2) to initialize the properly parameterized radiation scheme with realistic global irradiation conditions of the Rio San Francisco Valley in the Andes of southern Ecuador, and (3) to compare the PAR absorption capabilities of both species under typical local weather conditions. Field data show that bracken reveals a slightly higher average leaf area index (LAI) and more horizontally oriented leaves in comparison to Setaria. Spectrometer measurements reveal that bracken and Setaria are characterized by a similar average leaf absorptance. Simulations with the average diurnal course of incoming solar radiation (1998–2005) and the mean leaf–sun geometry reveal that PAR absorption is fairly equal for both species. However, the comparison of typical clear and overcast days show that two parameters, (1) the relation of incoming diffuse and direct irradiance, and (2) the leaf–sun geometry play a major role for PAR absorption in the two-big-leaf approach: Under cloudy sky conditions (mainly diffuse irradiance), PAR absorption is slightly higher for Setaria while under clear sky conditions (mainly direct irradiance), the average bracken individual is characterized by a higher PAR absorption potential. (∼74 MJ m−2 year−1). The latter situation which occurs if the maximum daily irradiance exceeds 615 W m−2 is mainly due to the nearly orthogonal incidence of the direct solar beam onto the horizontally oriented frond area which implies a high amount of direct PAR absorption during the noon maximum of direct irradiance. Such situations of solar irradiance favoring a higher PAR absorptance of bracken occur in ∼36% of the observation period (1998–2005). By considering the annual course of PAR irradiance in the San Francisco Valley, the clear advantage of bracken on clear days (36% of all days) is completely compensated by the slight but more frequent advantage of Setaria under overcast conditions (64% of all days). This means that neither bracken nor Setaria show a distinct advantage in PAR absorption capability under the current climatic conditions of the study area

Coquillettidia (Culicidae, Diptera) mosquitoes are natural vectors of avian malaria in Africa

<p>Abstract</p> <p>Background</p> <p>The mosquito vectors of <it>Plasmodium </it>spp. have largely been overlooked in studies of ecology and evolution of avian malaria and other vertebrates in wildlife.</p> <p>Methods</p> <p><it>Plasmodium </it>DNA from wild-caught <it>Coquillettidia </it>spp. collected from lowland forests in Cameroon was isolated and sequenced using nested PCR. Female <it>Coquillettidia aurites </it>were also dissected and salivary glands were isolated and microscopically examined for the presence of sporozoites.</p> <p>Results</p> <p>In total, 33% (85/256) of mosquito pools tested positive for avian <it>Plasmodium </it>spp., harbouring at least eight distinct parasite lineages. Sporozoites of <it>Plasmodium </it>spp. were recorded in salivary glands of <it>C. aurites </it>supporting the PCR data that the parasites complete development in these mosquitoes. Results suggest <it>C. aurites</it>, <it>Coquillettidia pseudoconopas </it>and <it>Coquillettidia metallica </it>as new and important vectors of avian malaria in Africa. All parasite lineages recovered clustered with parasites formerly identified from several bird species and suggest the vectors capability of infecting birds from different families.</p> <p>Conclusion</p> <p>Identifying the major vectors of avian <it>Plasmodium </it>spp. will assist in understanding the epizootiology of avian malaria, including differences in this disease distribution between pristine and disturbed landscapes.</p

Suspended silt concentrations in the lower Olifants River (Mpumalanga) and the impact of silt releases from the Phalaborwa Barrage on water quality and fish survival

Silt loads in the Olifants and Sabie river systems inside the Kruger National Park, were monitored by collecting water samples every consecutive week for a period of 20 months. The variation in silt concentration, changes in selected physico-chemical water quality variables and fish mortalities during flushing (i.e. release of silt, by sluicing) of the Phalaborwa Barrage, were also monitored. The Olifants River inside the Kruger National Park carried high silt loads in summer; in the dry season the suspensoid load was greatly reduced. A similar pattern was observed in the Sabie River, but the silt loads were generally lower. It was apparent that silt loads released from the Phalaborwa Barrage led to large variations in the natural silt loads of the Olifants River. These increased amounts of silt (25 000 mg/1 to >70 000 mg/1) caused drastic reductions in the dissolved oxygen concentration of the water, ranging from >6 mg/1 to 0 mg/1. Depending on the severity and duration of the flushing, fish succumb to such silt loads. These findings, as well as published information, indicate that the management strategy of flushing to improve storage capacity is ecological unacceptable. It is therefore suggested that the use of the Phalaborwa Barrage as a future reservoir should be critically re-evaluated