Extraction of Microbial and Host DNA, RNA, and Proteins from Oak Bark Tissue

The application of high-throughput nucleic acid and protein sequencing technologies is transforming our understanding of plant microbiomes and their interactions with their hosts in health and disease. However, progress in studying host-microbiome interactions in above-ground compartments of the tree (the phyllosphere) has been hampered due to high concentrations of phenolic compounds, lignin, and other compounds in tree bark that severely limit the success of DNA, RNA, and protein extraction. Here we present modified sample-preparation and kit-based protocols for the extraction of host and microbiome DNA and RNA from oak (Quercus robus and Quercus petraea) bark tissue for subsequent high-throughput sequencing. In addition, reducing the quantity of bark tissue used for an established protein extraction protocol yielded high quality protein for parallel analysis of the oak-microbiota metaproteome. These procedures demonstrate the successful extraction of nucleic acids and proteins from oak tissue using as little as 50 mg of sample input, producing sufficient quantities for nucleic acid sequencing and protein mass spectrometry of tree stem tissues and their associated microbiota. © 2019 by the authors. Licensee MDPI, Basel, Switzerland.Peer reviewe

Academic Success and Christian Affiliation in College

The goal of our study was to provide a more thorough understanding of the relationship between religious attitudes and academic success, and will provide direction for future research in this domain. Our research examined the relationship between Christianity, academic achievement, and mediating variables in college-aged students. Past studies regarding religion and academic success have found that in some communities, academic success is positively correlated with religious involvement. However, these studies primarily looked at academic success in relation to involvement in a religious community, and not to personal attitudes regarding religion. To gain a better understanding of the role of personal religious attitudes in academic success, this study specifically examined academic success in relation to Christian affiliation and spirituality, as well as intrinsic dispositions of positivity and mastery. These mediating variables were included to control for factors that may relate to both academic success and religiosity, providing a more complete view of the relationship between religious attitudes and academic success. Study participants included college students currently attending a small, public, liberal-arts university. The study utilized a descriptive research design in which participants self-reported details about their demographics, academic performance (i.e. GPA and participation in honors programming), religious beliefs, and personality characteristics associated with outlook and hopefulness. Our presentation will examine the results of our study in relation to questions regarding the role of personal beliefs and dispositions in academic success.https://digitalcommons.morris.umn.edu/urs_2015/1002/thumbnail.jp

Would Scots Law recognise a Dutch same-sex marriage?

Assesses the likelihood of Scottish law recognising the validity of same sex marriages performed in the Netherlands. Reviews case law concerning the recognition of foreign marriages per se, international private law's treatment of polygamous marriages and possible public policy arguments against same sex marriages. Explains the ways in which Scottish courts may give legal recognition to their consequences, including: (1) by acknowledging that they deny the parties the capacity to marry again for the duration of their subsistence, under the Marriage (Scotland) Act 1977 s.5(4); (2) by accepting the parties' entitlement to statutory protection in areas such as intestate succession or adoption; and (3) by the granting of matrimonial relief including divorce

Supersonic crack propagation in a class of lattice models of Mode III brittle fracture

We study a lattice model for mode III crack propagation in brittle materials in a stripe geometry at constant applied stretching. Stiffening of the material at large deformation produces supersonic crack propagation. For large stretching the propagation is guided by well developed soliton waves. For low stretching, the crack-tip velocity has a universal dependence on stretching that can be obtained using a simple geometrical argument.Comment: 4 pages, 3 figure

Cracks Cleave Crystals

The problem of finding what direction cracks should move is not completely solved. A commonly accepted way to predict crack directions is by computing the density of elastic potential energy stored well away from the crack tip, and finding a direction of crack motion to maximize the consumption of this energy. I provide here a specific case where this rule fails. The example is of a crack in a crystal. It fractures along a crystal plane, rather than in the direction normally predicted to release the most energy. Thus, a correct equation of motion for brittle cracks must take into account both energy flows that are described in conventional continuum theories and details of the environment near the tip that are not.Comment: 6 page

Mendelian randomization highlights insomnia as a risk factor for pain diagnoses

Study Objective: Insomnia has been linked to acute and chronic pain conditions; however, it is unclear whether such relationships are causal. Recently, a large number of genetic variants have been discovered for both insomnia and pain through genome-wide association studies (GWASs) providing a unique opportunity to examine the evidence for causal relationships through the use of the Mendelian randomization paradigm. Methods: To elucidate the causality between insomnia and pain, we performed bidirectional Mendelian randomization analysis in FinnGen, where clinically diagnosed ICD-10 categories of pain had been evaluated. In addition, we used measures of self-reported insomnia symptoms. We used endpoints for pain in the FinnGen Release 5 (R5) (N = 218,379), and a non-overlapping sample for insomnia (UK Biobank (UKBB) and 23andMe, N = 1,331,010 or UKBB alone N = 453,379). We assessed the robustness of results through conventional Mendelian randomization sensitivity analyses. Results: Genetic liability to insomnia symptoms increased the odds of reporting pain (odds ratio (OR) [95% confidence interval (CI)] = 1.47 [1.38-1.58], p = 4.12 x 10(-28)). Manifested pain had a small effect on increased risk for insomnia (OR [95% CI] = 1.04 [1.01-1.07], p < 0.05). Results were consistent in sensitivity analyses. Conclusions: Our findings support a bidirectional causal relationship between insomnia and pain. These data support a further clinical investigation into the utility of insomnia treatment as a strategy for pain management and vice versa.Peer reviewe

Some exact results for the velocity of cracks propagating in non-linear elastic models

We analyze a piece-wise linear elastic model for the propagation of a crack in a stripe geometry under mode III conditions, in the absence of dissipation. The model is continuous in the propagation direction and discrete in the perpendicular direction. The velocity of the crack is a function of the value of the applied strain. We find analytically the value of the propagation velocity close to the Griffith threshold, and close to the strain of uniform breakdown. Contrary to the case of perfectly harmonic behavior up to the fracture point, in the piece-wise linear elastic model the crack velocity is lower than the sound velocity, reaching this limiting value at the strain of uniform breakdown. We complement the analytical results with numerical simulations and find excellent agreement.Comment: 9 pages, 13 figure

Age- and Lesion-Related Comorbidity Burden Among US Adults With Congenital Heart Disease: A Population-Based Study.

Background As patients with congenital heart disease (CHD) are living longer, understanding the comorbidities they develop as they age is increasingly important. However, there are no published population-based estimates of the comorbidity burden among the US adult patients with CHD. Methods and Results Using the IBM MarketScan commercial claims database from 2010 to 2016, we identified adults aged ≥18 years with CHD and 2 full years of continuous enrollment. These were frequency matched with adults without CHD within categories jointly defined by age, sex, and dates of enrollment in the database. A total of 40&nbsp;127 patients with CHD met the inclusion criteria (mean [SD] age, 36.8 [14.6] years; and 48.2% were women). Adults with CHD were nearly twice as likely to have any comorbidity than those without CHD (P&lt;0.001). After adjusting for covariates, patients with CHD had a higher prevalence risk ratio for "previously recognized to be common in CHD" (risk ratio, 9.41; 95% CI, 7.99-11.1), "other cardiovascular" (risk ratio, 1.73; 95% CI, 1.66-1.80), and "noncardiovascular" (risk ratio, 1.47; 95% CI, 1.41-1.52) comorbidities. After adjusting for covariates and considering interaction with age, patients with severe CHD had higher risks of previously recognized to be common in CHD and lower risks of other cardiovascular comorbidities than age-stratified patients with nonsevere CHD. For noncardiovascular comorbidities, the risk was higher among patients with severe than nonsevere CHD before, but not after, the age of 40&nbsp;years. Conclusions Our data underscore the unique clinical needs of adults with CHD compared with their peers. Clinicians caring for CHD may want to use a multidisciplinary approach, including building close collaborations with internists and specialists, to help provide appropriate care for the highly prevalent noncardiovascular comorbidities

Evolution of P2A and P5A ATPases:ancient gene duplications and the red algal connection to green plants revisited

In a search for slowly evolving nuclear genes that may cast light on the deep evolution of plants, we carried out phylogenetic analyses of two well-characterized subfamilies of P-type pumps (P2A and P5A ATPases) from representative branches of the eukaryotic tree of life. Both P-type ATPase genes were duplicated very early in eukaryotic evolution and before the divergence of the present eukaryotic supergroups. Synapomorphies identified in the sequences provide evidence that green plants and red algae are more distantly related than are green plants and eukaryotic supergroups in which secondary or tertiary plastids are common, such as several groups belonging to the clade that includes Stramenopiles, Alveolata, Rhizaria, Cryptophyta and Haptophyta (SAR). We propose that red algae branched off soon after the first photosynthesizing eukaryote had acquired a primary plastid, while in another lineage that led to SAR, the primary plastid was lost but, in some cases, regained as a secondary or tertiary plastid