Master of Science

thesisQUIC EnvSim (QES) is a complete building-resolving urban microclimate modeling system developed to rapidly compute mass, momentum, and heat transport for the design of sustainable cities. One of the more computationally intensive components of this type of modeling system is the transport and dispersion of scalars. In this paper, we describe and evaluate QESTransport, a Reynolds-averaged Navier-Stokes (RANS) scalar transport model. QESTransport makes use of light-weight methods and modeling techniques. It is parallelized for Graphics Processing Units (GPUs), utilizing NVIDIA's OptiX application programming interfaces (APIs). QESTransport is coupled with the well-validated QUIC Dispersion Modeling system. To couple the models, a new methodology was implemented to efficiently prescribe surface flux boundary conditions on both vertical walls and flat surfaces. In addition, a new internal boundary layer parameterization was introduced into QUIC to enable the representation of momentum advection across changing surface conditions. QESTransport is validated against the following three experimental test cases designed to evaluate the model's performance under idealized conditions: (i) flow over a step change in moisture, roughness, and temperature, (ii) flow over an isolated heated building, and (iii) flow through an array of heated buildings. For all three cases, the model is compared against published simulation results. QESTransport produces velocity, temperature, and moisture fields that are comparable to much more complex numerical models for each case. The code execution time performance is evaluated and demonstrates linear scaling on a single GPU for problem sizes up to 4.5 x 4.5 km at 5 m grid resolution, and is found to produce results at much better than real time for a 1.2 x 1.2 km section of downtown Salt Lake City, Utah

Chandra Reveals Variable Multi-Component X-ray Emission from FU Orionis

FU Orionis is the prototype of a class of eruptive young stars (``FUors'') characterized by strong optical outbursts. We recently completed an exploratory survey of FUors using XMM-Newton to determine their X-ray properties, about which little was previously known. The prototype FU Ori and V1735 Cyg were detected. The X-ray spectrum of FU Ori was found to be unusual, consisting of a cool moderately-absorbed component plus a hotter component viewed through an absorption column density that is an order of magnitude higher. We present here a sensitive (99 ks) follow-up X-ray observation of FU Ori obtained at higher angular resolution with Chandra ACIS-S. The unusual multi-component spectrum is confirmed. The hot component is centered on FU Ori and dominates the emission above 2 keV. It is variable (a signature of magnetic activity) and is probably coronal emission originating close to FU Ori's surface viewed through cool gas in FU Ori's strong wind or accretion stream. In contrast, the X-ray centroid of the soft emission below 2 keV is offset 0.20 arcsec to the southeast of FU Ori, toward the near-IR companion (FU Ori S). This offset amounts to slightly less than half the separation between the two stars. The most likely explanation for the offset is that the companion contributes significantly to the softer X-ray emission below 2 keV (and weakly above 2 keV). The superimposed X-ray contributions from FU Ori and the companion resolve the paradox posed by XMM-Newton of an apparently single X-ray source viewed through two different absorption columns.Comment: 21 pages, 3 tables, 6 figure

Effects of macrofauna on acoustic backscatter from the seabed: Field manipulations in West Sound, Orcas Island, Washington, U.S.A.

Previous observations with a bottom-mounted, radially scanning sonar (BAMS) at 40 kHz suggested that macrofaunal activities influence low-angle, acoustic backscatter from seafloor sediments. In order to test that possibility experimentally, we measured and modeled time series of backscatter strength at both 40 and 300 kHz prior to manipulation and then introduced several macrofaunal species at known abundances to randomly selected locations within the ensonified area. We worked in West Sound, Orcas Island, Washington, at a water depth of 20.4 m and for the more frequently recorded 40-kHz series extracted effects by the time-series method known as intervention analysis, wherein the intervention was the experimental alteration. We observed increased backscatter from patches of the small protobranch bivalve Acila castrensis, and of the cockle Clinocardium nuttali, from bait used as chum for fishes and crabs, and from tethered crabs (Cancer magister); other treatments showed no significant change. All of the effective treatments involved increased backscatter at 300 kHz from animals that have obvious hard parts or air bladders. Power calculations for intervention analysis and geoacoustic modeling suggest that failure of other treatments to show significant effects on backscatter strength stems from the small size of the organisms and structures used relative to the 40-kHz wavelength (3.7 cm) and to low sound-speed contrasts between surficial sediments at this site and overlying water (at both frequencies), producing low backscatter levels from both volume heterogeneity and surface microtopography. This experiment demonstrates, however, that low-angle acoustic backscatter can be used to observe at least some populations of benthic animals over a large area (ca. 8000 m2) and that intervention analysis can be a useful tool where logistics permit repeated observation but few or no spatial replicates—frequently the case in ecological manipulations

The Unusual X-ray Spectrum of FU Orionis

FU Orionis stars (FUors) are young low-mass eruptive stars that are thought to be accreting at high rates. They could give rise to soft X-ray emission from accretion shocks, but their X-ray properties are largely unknown. We report the first X-ray detection of the prototype star FU Orionis with XMM-Newton. Its X-ray spectrum is unusual compared to those of classical T Tauri stars (cTTS). The cool and hot components typically detected in cTTS are present but are seen through different absorption column densities. A heavily-absorbed hot component at kT > 5 keV accounts for most of the observed flux and a strong Fe K emission line is present. Such high temperatures are characteristic of magnetic processes rather than shock emission. We discuss possible origins of the unusual spectrum in the context of a complex physical environment that likely includes disk accretion, a strong wind, magnetic activity, and close binarity.Comment: ApJ, vol. 643, in press. 23 pages, 4 figures, 1 tabl

Mechanical and hydrological impacts of tree removal on a clay fill railway embankment

Seasonal shrinkage and swelling of clay fill railway embankments can disturb the track geometry, resulting in train speed restrictions that disrupt normal operations. Such movements are exacerbated by vegetation, but reliable analytical descriptions of the effects of trees on embankment behaviour are not yet established. This paper presents and analyses the results of a field experiment, carried out on a heavily vegetated clay railway embankment to investigate quantitatively the influence of trees. After the first year of monitoring, the mature trees initially present on the upper two-thirds of the embankment slopes were removed. The field monitoring data are used to assess and understand the mechanisms of soil water content and pore water pressure changes before and after tree removal, and their influence on the vertical and lateral displacements of the embankment slopes. Removal of the vegetation stopped seasonal volume changes in the clay fill at the crest of the earthwork, but also resulted in the loss of the deep-seated suctions generally beneficial to embankment stability. The wider implications for the management of vegetation on embankment slopes are discusse

Use of materials in nest construction by Pied Flycatchers Ficedula hypoleuca reflects localised habitat and geographical location.

Capsule Pied Flycatchers use different materials to construct their nests according to localised habitat and geographical location. Aims This study tested the hypotheses that birds would use the leaves they normally encountered within their breeding territories and that nest composition varied between geographical locations. Methods In Lancashire, Pied Flycatcher nests were collected from nestboxes built in locations dominated by different tree species and were deconstructed to determine which materials were used. Results Materials found in nests generally reflected the localised habitat around the nest rather than showing evidence of active collection from distant sources of material. Nests from Lancashire were significantly different in composition when compared with published data for nests from north Wales and central Spain. The use of moss was dominated by the use of one species in all but two nests. Conclusion Pied Flycatchers exhibit plasticity in nest construction behaviour because they were opportunistic in their choice of most nesting materials although they may be selective in their choice of moss

Jean Briggs's Never in Anger as an Ethnography of Experience

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/66542/2/10.1177_0308275X9301300406.pd

Effectiveness of GonaCon as an immunocontraceptive in colony-housed cats

Objectives Non-surgical contraceptive management of free-roaming cat populations is a global goal for public health and humane reasons. The objectives of this study were to measure the duration of contraception following a single intramuscular injection of a gonadotropin-releasing hormone-based vaccine (GonaCon) and to confirm its safe use in female cats living in colony conditions. Methods GonaCon (0.5 ml/cat) was administered intramuscularly to 20 intact female cats (queens), and saline was administered to 10 queens serving as sham-treated controls. Beginning in late February, 4 months after injection, all cats were housed with fertile male cats in a simulated colony environment. Time to pregnancy, fetal counts and vaccine-elicited injection-site reactions were evaluated. Results All control cats (n = 10/10) and 60% (n = 12/20) of vaccinated cats became pregnant within 4 months of the introduction of males. Two additional vaccinates became pregnant (70%; n = 14/20) within 1 year of treatment. Average fetal counts were significantly lower in vaccinated cats than in control cats. Vaccinates had a significantly longer (P = 0.0120) median time to conception (212 days) compared with controls (127.5 days). Injection-site reactions ranging from swelling to transient granulomatous masses were observed in 45% (n = 9/20) of vaccinated cats. Conclusions and relevance A single dose of GonaCon provided contraception lasting for a minimum of 1 year in 30% (n = 6/20) of treated cats. The level of contraception induced by this GonaCon dose and vaccine lot was not sufficiently effective to be recommended for use in free-roaming cats

Effectiveness of GonaCon as an immunocontraceptive in colony-housed cats

Objectives Non-surgical contraceptive management of free-roaming cat populations is a global goal for public health and humane reasons. The objectives of this study were to measure the duration of contraception following a single intramuscular injection of a gonadotropin-releasing hormone-based vaccine (GonaCon) and to confirm its safe use in female cats living in colony conditions. Methods GonaCon (0.5 ml/cat) was administered intramuscularly to 20 intact female cats (queens), and saline was administered to 10 queens serving as sham-treated controls. Beginning in late February, 4 months after injection, all cats were housed with fertile male cats in a simulated colony environment. Time to pregnancy, fetal counts and vaccine-elicited injection-site reactions were evaluated. Results All control cats (n = 10/10) and 60% (n = 12/20) of vaccinated cats became pregnant within 4 months of the introduction of males. Two additional vaccinates became pregnant (70%; n = 14/20) within 1 year of treatment. Average fetal counts were significantly lower in vaccinated cats than in control cats. Vaccinates had a significantly longer (P = 0.0120) median time to conception (212 days) compared with controls (127.5 days). Injection-site reactions ranging from swelling to transient granulomatous masses were observed in 45% (n = 9/20) of vaccinated cats. Conclusions and relevance A single dose of GonaCon provided contraception lasting for a minimum of 1 year in 30% (n = 6/20) of treated cats. The level of contraception induced by this GonaCon dose and vaccine lot was not sufficiently effective to be recommended for use in free-roaming cats