Enhanced pelagic biomass around coral atolls

T.B.L. was supported by the Marine Biodiversity Hub through the Australian Government’s National Environmental Research Program (NERP). P.H.B.-S. was supported by a Cusanuswerk doctoral fellowship, a Lesley & Charles Hilton-Brown Scholarship, University of St. Andrews, and a grant from the Fisheries Society of the British Isles. M.J.C. was supported by Australian Research Council grant FS110200057.Understanding the processes driving the distribution of mid-water prey such as euphausiids and lanternfish is important for effective management and conservation. In the vicinity of abrupt topographic features such as banks, seamounts and shelf-breaks, mid-water faunal biomass is often elevated, making these sites candidates for special protection. We investigated the spatial distribution of water column acoustic backscatter - a proxy for macrozoo - plankton and fish biomass - in the 9 km transition zone between the pelagos and coral atolls in the Chagos Archipelago (6° N, 72° E). The purpose was to determine the magnitude and distance over which bathymetry may enhance biomass in the mid-water, and thereby identify the scale over which static topographic features could influence the open ocean. Two distinct sound scattering layers were identified, from the surface to 180 m and from 300 to 600 m, during daytime. Both layers exhibited significant increases in backscatter near features. Close to features, the shallow layer backscatter was ca. 100 times higher and was driven partly by increasing numbers of larger individuals, evident as single target echoes. We determine the regional scale of influence of features on pelagic biomass enhancement to be ca. 1.8 km in the Chagos Archipelago, and suggest possible ecological explanations that may support it. Our approach determining the scale of influence of bathymetry should be applied during the process of marine reserve design, in order to improve protection of mid-water fauna associated with topographical features, such as seamounts and coral reefs.PostprintPeer reviewe

The fine sediment conundrum; quantifying, mitigating and managing the issues

Copyright © 2017 John Wiley & Sons, Ltd. Excess fine sediment is a global cause of lotic ecosystem degradation. Despite historic interest in identifying sediment sources and quantifying instream dynamics, tackling fine sediment problems remains a key challenge for river managers and a continued focus of international research. Accordingly, a national meeting of the British Hydrological Society brought together those working on fine sediment issues at the interface of hydrology, geomorphology, and ecology. The resulting collection of papers illustrates the range of research being undertaken in this interdisciplinary research arena, by academic researchers, environmental regulators, landowners, and consultants. More specifically, the contributions highlight key methodological advancements in the identification of fine sediment sources, discuss the complexities surrounding the accurate quantification of riverbed fine sediment content, demonstrate the potential utility of faunal traits as a biological monitoring tool, and recognize the need for improved mechanistic understanding of the functional responses of riverine organisms to excess fine sediment. Understanding and mitigating the effects of fine sediment pressures remains an important and multifaceted problem that requires interdisciplinary collaborative research to deliver novel and robust management tools and sustainable solutions

Implementing and characterizing precise multi-qubit measurements

There are two general requirements to harness the computational power of quantum mechanics: the ability to manipulate the evolution of an isolated system and the ability to faithfully extract information from it. Quantum error correction and simulation often make a more exacting demand: the ability to perform non-destructive measurements of specific correlations within that system. We realize such measurements by employing a protocol adapted from [S. Nigg and S. M. Girvin, Phys. Rev. Lett. 110, 243604 (2013)], enabling real-time selection of arbitrary register-wide Pauli operators. Our implementation consists of a simple circuit quantum electrodynamics (cQED) module of four highly-coherent 3D transmon qubits, collectively coupled to a high-Q superconducting microwave cavity. As a demonstration, we enact all seven nontrivial subset-parity measurements on our three-qubit register. For each we fully characterize the realized measurement by analyzing the detector (observable operators) via quantum detector tomography and by analyzing the quantum back-action via conditioned process tomography. No single quantity completely encapsulates the performance of a measurement, and standard figures of merit have not yet emerged. Accordingly, we consider several new fidelity measures for both the detector and the complete measurement process. We measure all of these quantities and report high fidelities, indicating that we are measuring the desired quantities precisely and that the measurements are highly non-demolition. We further show that both results are improved significantly by an additional error-heralding measurement. The analyses presented here form a useful basis for the future characterization and validation of quantum measurements, anticipating the demands of emerging quantum technologies.Comment: 10 pages, 5 figures, plus supplemen

Growth or decline in the Church of England during the decade of Evangelism: did the Churchmanship of the Bishop matter?

The Decade of Evangelism occupied the attention of the Church of England throughout the 1990s. The present study employs the statistics routinely published by the Church of England in order to assess two matters: the extent to which these statistics suggest that the 43 individual dioceses finished the decade in a stronger or weaker position than they had entered it and the extent to which, according to these statistics, the performance of dioceses led by bishops shaped in the Evangelical tradition differed from the performance of dioceses led by bishops shaped in the Catholic tradition. The data demonstrated that the majority of dioceses were performing less effectively at the end of the decade than at the beginning, in terms of a range of membership statistics, and that the rate of decline varied considerably from one diocese to another. The only exception to the trend was provided by the diocese of London, which experienced some growth. The data also demonstrated that little depended on the churchmanship of the diocesan bishop in shaping diocesan outcomes on the performance indicators employed in the study

Annexin A2 Binds RNA and Reduces the Frameshifting Efficiency of Infectious Bronchitis Virus

Annexin A2 (ANXA2) is a protein implicated in diverse cellular functions, including exocytosis, DNA synthesis and cell proliferation. It was recently proposed to be involved in RNA metabolism because it was shown to associate with some cellular mRNA. Here, we identified ANXA2 as a RNA binding protein (RBP) that binds IBV (Infectious Bronchitis Virus) pseudoknot RNA. We first confirmed the binding of ANXA2 to IBV pseudoknot RNA by ultraviolet crosslinking and showed its binding to RNA pseudoknot with ANXA2 protein in vitro and in the cells. Since the RNA pseudoknot located in the frameshifting region of IBV was used as bait for cellular RBPs, we tested whether ANXA2 could regulate the frameshfting of IBV pseudoknot RNA by dual luciferase assay. Overexpression of ANXA2 significantly reduced the frameshifting efficiency from IBV pseudoknot RNA and knockdown of the protein strikingly increased the frameshifting efficiency. The results suggest that ANXA2 is a cellular RBP that can modulate the frameshifting efficiency of viral RNA, enabling it to act as an anti-viral cellular protein, and hinting at roles in RNA metabolism for other cellular mRNAs

Dynamic Habitat Disturbance and Ecological Resilience (DyHDER): Modeling Population Responses to Habitat Condition

Understanding how populations respond to spatially heterogeneous habitat disturbance is as critical to conservation as it is challenging. Here, we present a new, free, and open‐source metapopulation model: Dynamic Habitat Disturbance and Ecological Resilience (DyHDER), which incorporates subpopulation habitat condition and connectivity into a population viability analysis framework. Modeling temporally dynamic and spatially explicit habitat disturbance of varying magnitude and duration is accomplished through the use of habitat time‐series data and a mechanistic approach to adjusting subpopulation vital rates. Additionally, DyHDER uses a probabilistic dispersal model driven by site‐specific habitat suitability, density dependence, and directionally dependent connectivity. In the first application of DyHDER, we explore how fragmentation and projected climate change are predicted to impact a well‐studied Bonneville cutthroat trout metapopulation in the Logan River (Utah, USA). The DyHDER model predicts which subpopulations are most susceptible to disturbance, as well as the potential interactions between stressors. Further, the model predicts how populations may be expected to redistribute following disturbance. This information is valuable to conservationists and managers faced with protecting populations of conservation concern across landscapes undergoing changing disturbance regimes. The DyHDER model provides a valuable and generalizable new tool to explore metapopulation resilience to spatially and temporally dynamic stressors for a diverse range of taxa and ecosystems

Modelling physical characteristics of river habitats

The physical characteristics of river habitats constitute the setting in which fluvial biota dwell and thrive. Determining the spatial and temporal patterns of physical habitat characteristics and the main factors that control them is extremely important to increase the efficiency of river management, conservation, and restoration. This study determined spatial patterns of physical habitat characteristics for Atlantic and Mediterranean rivers in northern Spain and developed a river classification based on hydromorphological characteristics. Data gathered from almost 600 sites following a modified version of the River Habitat Survey methodology were used. In addition to the usual River Habitat Survey variables, the sequence of hydromorphologic units (i.e., areas exhibiting similar hydraulic characteristics, in terms of water velocity and depth), water depths, and widths were recorded. Unmodified reaches were selected computing the Habitat Modification Score. Multiple Linear Regression models were employed to test relationships between Principal Component Analyses that summarized physical river habitat characteristics with ecological relevance and environmental variables (i.e., climate, topography, land cover, and geology) at different spatial scales and used to predict physical habitat attributes for all river reaches. The density of hydromorphologic units, flow turbulence, substrate size, and channel dimensions were able to discriminate river classes within the river network, with topography being the main environmental driver of habitat characteristics (although climate, geology, and land cover were also relevant). This classification scheme could constitute a useful tool to restore physical habitat conditions in modified river reaches.info:eu-repo/semantics/acceptedVersio