Trends in Pulse and Oilseed Crops in Winter Cereal Rotations in NSW

The key aims in this study are to assess the current level of importance of pulse and oilseed (broadleaf) crops in winter cereal rotations in NSW, and to identify recent trends. The production of broadleaf crops has increased in each region of NSW, but different crops have been favoured. Canola has played a key role in southern regions, and chickpea in the northern regions. In many areas, pulse crops have been grown more because of rotational benefits than their direct gross margins. If recent trends continue, the role of broadleaf crops will increase to 25% of the area sown to field crops in NSW by 2020. However, that will only be achieved with a focussed effort in both research and extension activities.broadleaf crop, oilseed, pulse, production, rotation, NSW, Agribusiness, Crop Production/Industries, Production Economics, Research and Development/Tech Change/Emerging Technologies, Q160,

Enteropathogen survival in soil from different land-uses is predominantly regulated by microbial community composition

peer-reviewedMicrobial enteropathogens can enter the environment via landspreading of animal slurries and manures. Biotic interactions with the soil microbial community can contribute to their subsequent decay. This study aimed to determine the relative impact of biotic, specifically microbial community structure, and physico-chemical properties associated with soils derived from 12 contrasting land-uses on enteropathogen survival. Phenotypic profiles of microbial communities (via phospholipid fatty acid (PLFA) profiling), and total biomass (by fumigation-extraction), in the soils were determined, as well as a range of physicochemical properties. The persistence of Salmonella Dublin, Listeria monocytogenes, and Escherichia coli was measured over 110 days within soil microcosms. Physicochemical and biotic data were used in stepwise regression analysis to determine the predominant factor related to pathogen-specific death rates. Phenotypic structure, associated with a diverse range of constituent PLFAs, was identified as the most significant factor in pathogen decay for S. Dublin, L. monocytogenes, non-toxigenic E. coli O157 but not for environmentally-persistent E. coli. This demonstrates the importance of entire community-scale interactions in pathogen suppression, and that such interactions are context-specific

Optimal strategies for regional cultivar testing

In undertaking cultivar trials, the variability of the response of the cultivars to the different environments in which they are grown introduces the possibility of release errors and non‐release errors in the decisions made on the basis of the trial results. In this article a model is developed that accounts for the economic costs of those errors as well as the costs of operating the trials, and enables the features of the optimal cultivar testing program to be identified. The model is illustrated by application to wheat cultivar trials in central and southern NSW.Crop Production/Industries,

Defining the Costs of an Outbreak of Karnal Bunt of Wheat

In determining the economic impact of a possible outbreak of the quarantinable wheat disease Karnal Bunt, an examination was made of the detailed components of the costs involved. The costs were classified as: (a) Direct costs (yield and quality losses); (b) Reaction costs (export bans, quality down-grading, seed industry costs); and (c) Control costs (quarantine zones, fungicides, spore destruction). The relative importance of each of these cost components is measured for a hypothetical outbreak of Karnal Bunt in the European Union, as a means of ensuring that the policy responses to such an outbreak are appropriate considering the costs involved.disease, quarantine, cost, wheat, Agricultural and Food Policy, Crop Production/Industries,

Relating growth potential and biofilm formation of Shigatoxigenic Escherichia coli to in planta colonisation and the metabolome of ready- to-eat crops

preprintContamination of fresh produce with pathogenic Escherichia coli, including Shigatoxigenic E. coli (STEC), represents a serious risk to human health. Colonisation is governed by multiple bacterial and plant factors that can impact on the probability and suitability of bacterial growth. Thus, we aimed to determine whether the growth potential of STEC for plants associated with foodborne outbreaks (two leafy vegetables and two sprouted seed species), is predictive for colonisation of living plants as assessed from growth kinetics and biofilm formation in plant extracts. Fitness of STEC was compared to environmental E. coli, at temperatures relevant to plant growth. Growth kinetics in plant extracts varied in a plant-dependent and isolate-dependent manner for all isolates, with spinach leaf lysates supporting the fastest rates of growth. Spinach extracts also supported the highest levels of biofilm formation. Saccharides were identified as the major driver of bacterial growth, although no single metabolite could be correlated with growth kinetics. The highest level of in planta colonisation occurred on alfalfa sprouts, though internalisation was 10-times more prevalent in the leafy vegetables than in sprouted seeds. Marked differences in in planta growth meant that growth potential could only be inferred for STEC for sprouted seeds. In contrast, biofilm formation in extracts related to spinach colonisation. Overall, the capacity of E. coli to colonise, grow and internalise within plants or plant-derived matrices were influenced by the isolate type, plant species, plant tissue type and temperature, complicating any straight-forward relationship between in vitro and in planta behaviours. Importance Fresh produce is an important vehicle for STEC transmission and experimental evidence shows that STEC can colonise plants as secondary hosts, but differences in the capacity to colonise occur between different plant species and tissues. Therefore, an understanding of the impact of these plant factors have on the ability of STEC to grow and establish is required for food safety considerations and risk assessment. Here, we determined whether growth and the ability of STEC to form biofilms in plants extracts could be related to specific plant metabolites or could predict the ability of the bacteria to colonise living plants. Growth rates for sprouted seeds (alfalfa and fenugreek) exhibited a positive relationship between plant extracts and living plants, but not for leafy vegetables (lettuce and spinach). Therefore, the detailed variations at the level of the bacterial isolate, plant species and tissue type all need to be considered in risk assessment

Plant species and soil depth differentially affect microbial diversity and function in grasslands

peer-reviewedSupplementary information (datafile) for Kerry B. Ryan, Alexandre De Menezes, John A. Finn (2023) Fiona P. Brennan, Datafile: Grassland species differentially affect microbial diversity and function with soil depthIntroduction Grassland ecosystems are a major store of terrestrial carbon (C), yet little is known about their capacity to cycle and store C in deeper soil horizons. Further, it is unclear how plant community composition within agricultural grasslands mediates this capacity and influences microbial community composition. We investigated whether the aboveground community composition in intensively-managed agricultural grasslands influenced belowground microbial community composition, abundance, respiration and enzyme activities with depth. Materials & methods Soil was sampled in four soil layers: A (0-15 cm), B (15-30 cm), C (30-60 cm) and D (60-90cm) in monocultures of six grassland species, and a mixture of all six. Functional capacity was measured through enzymatic and substrate induced respiration assays, and microbial abundance and diversity were assessed via qPCR and sequencing (16S, ITS), respectively. Results Microbial abundance and C cycling enzyme activity decreased, and community composition changed, along the soil depth gradient, regardless of the plant community. Microbial abundance was not significantly influenced by plant community type across the entire soil depth profile. However, prokaryotic community composition was significantly influenced by plant community in the top 15 cm of soil, and fungal community composition was significantly influenced between 15-30 cm in depth. Plant community types mediated the rate at which C cycling enzyme activity decreased along the soil depth gradient, and selected C cycling enzymes were significantly more active at 15-60 cm depth when Cichorium intybus (a deep rooting species) was present. Conclusion This study provides an improved understanding of how agricultural grassland communities affect the soil microbiome with depth; this has potential implications for the management of these systems for enhanced soil health. Our work indicates the potential for multi-species mixtures with deep rooting species to be a practical strategy to increase C cycling capacity in deeper soil layers within grasslands, which may have implications for policy goals related to C storage

Apremilast, a novel PDE4 inhibitor, inhibits spontaneous production of tumour necrosis factor-alpha from human rheumatoid synovial cells and ameliorates experimental arthritis

Introduction: Type 4 phosphodiesterases (PDE4) play an important role in immune cells through the hydrolysis of the second messenger, cAMP. Inhibition of PDE4 has previously been shown to suppress immune and inflammatory responses, demonstrating PDE4 to be a valid therapeutic target for immune-mediated pathologies. We assessed the anti-inflammatory effects of a novel PDE4 inhibitor, apremilast, in human synovial cells from rheumatoid arthritis (RA) patients, as well as two murine models of arthritis

Increasing soil pH reduces fertiliser derived N2O emissions in intensively managed temperate grassland

peer-reviewedSoil pH is generally considered a master variable, controlling a wide range of physical, chemical and biological properties, including a significant effect on microbial processes responsible for production and consumption of nitrous oxide (N2O), a potent greenhouse gas. Evidence of this pH impact on microbial denitrification mainly stems from observations in controlled laboratory experiments, while the results from field studies are mainly short-term, more variable and circumstantial. Soil pH is also one of the main factors controlling the availability of soil phosphorous (P), which has been also linked with N2O emissions. Here, we utilised an existing intensive grassland liming and P trial to investigate the effect of longer-term lime and P management and their interaction on N2O emissions and grassland productivity. The treatment plots were subject to different liming and P fertilisation strategies over 8 years and had a wide gradient of soil pH (5.1–6.9) and extractable P (2.3–8.3 mg kg−1). All plots received a total of 300 kg ha−1 of fertiliser nitrogen (N), applied in 8 splits across the growing season. N2O emissions, soil mineral N and grass yields were measured over 12-month period. We found a negative linear relationship between soil pH and cumulative N2O emissions, with a decrease in N2O emissions up to 39 % from limed plots compared to the unlimed control. The same effect was observed in relation to N2O emission factors and yield-scaled N2O emissions. Extractable soil P content had positive effect on yields, but no effect of P or P and pH interaction was observed in terms of direct N2O emissions or yield-scaled N2O emissions. We estimated that the increase in soil pH of grasslands in Ireland over the last 12 years potentially reduced national N2O emissions by 95 Gg CO2-eq yr−1, with potential for a further reduction by up to 254 Gg CO2-eq yr−1 if all the remaining acidic soils are brought up to optimal pH

Soil bacterial community structure and functional responses across a long-term mineral phosphorus (Pi) fertilisation gradient differ in grazed and cut grasslands

peer-reviewedGrasslands form a significant proportion of land used across the globe and future management is important. The objective of this study was to compare the long-term impact of inorganic phosphorus (Pi) fertilisation rates (P0, P15 and P30 ha−1 yr−1) under two grass management trials (grazed vs. cut and removed) on soil physicochemical properties, microbial biomass, phosphomonoesterase activity, bacterial community structure and abundance of a phosphorus (P) mineralising gene (phoD). Under grazing, microbial biomass and soil phosphorus concentrations (total and Pi) generally increased with Pi fertilisation rate, accompanied by significant differences in bacterial community structure between unfertilised (P0) and P30 soil. At the cut and removed site, although Pi was significantly greater in P30 soil, P concentrations (total and Pi) did not increase to the same extent as for grazing, with microbial biomass and bacterial community structures unresponsive to Pi fertilisation. Despite differences in soil P concentrations (total and Pi) and microbial biomass between sites, the abundance of bacterial phoD increased with increasing soil Pi across both sites, while phosphomonoesterase activity decreased. Amplicon sequencing revealed Acidobacteria were the dominant bacterial phylum across both grasslands, but significant differences in relative abundances of bacterial genera were detected at the grazed site only. The bacterial genera Gp6 and Gp16 increased significantly with Pi fertilisation under grazing. Conversely, Bradyrhizobium as well as unclassified genus-type groups belonging to Actinobacteria and Acidimicrobiales significantly decreased with Pi fertilisation, suggesting potential roles in P mobilisation when soil Pi concentrations are low. This study highlights the importance of long-term Pi fertilisation rates and aboveground vegetation removal in shaping soil bacterial community structure and microbial biomass, which in turn may impact soil fertility and plant productivity within agricultural soils