Poke: An open-source ray-based physical optics platform

Integrated optical models allow for accurate prediction of the as-built performance of an optical instrument. Optical models are typically composed of a separate ray trace and diffraction model to capture both the geometrical and physical regimes of light. These models are typically separated across both open-source and commercial software that don't interface with each other directly. To bridge the gap between ray trace models and diffraction models, we have built an open-source optical analysis platform in Python called Poke that uses commercial ray tracing APIs and open-source physical optics engines to simultaneously model scalar wavefront error, diffraction, and polarization. Poke operates by storing ray data from a commercial ray tracing engine into a Python object, from which physical optics calculations can be made. We present an introduction to using Poke, and highlight the capabilities of two new propagation physics modules that add to the utility of existing scalar diffraction models. Gaussian Beamlet Decomposition is a ray-based approach to diffraction modeling that allows us to integrate physical optics models with ray trace models to directly capture the influence of ray aberrations in diffraction simulations. Polarization Ray Tracing is a ray-based method of vector field propagation that can diagnose the polarization aberrations in optical systems. Poke has been recently used to study the next generation of astronomical observatories, including the ground-based Extremely Large Telescopes and a 6 meter space telescope early concept for NASA's Habitable Worlds Observatory.Comment: 11 Pages, 9 Figures, Published in Proceedings of SPIE Optical Modeling and Performance Predictions XIII Paper 12664-

FIREBall-2: flight preparation of a proven balloon payload to image the intermediate redshift circumgalactic medium

FIREBall-2 is a stratospheric balloon-borne 1-m telescope coupled to a UV multi-object slit spectrograph designed to map the faint UV emission surrounding z~0.7 galaxies and quasars through their Lyman-alpha line emission. This spectro-imager had its first launch on September 22nd 2018 out of Ft. Sumner, NM, USA. Because the balloon was punctured, the flight was abruptly interrupted. Instead of the nominal 8 hours above 32 km altitude, the instrument could only perform science acquisition for 45 minutes at this altitude. In addition, the shape of the deflated balloon, combined with a full Moon, revealed a severe off-axis scattered light path, directly into the UV science detector and about 100 times larger than expected. In preparation for the next flight, and in addition to describing FIREBall-2's upgrade, this paper discusses the exposure time calculator (ETC) that has been designed to analyze the instrument's optimal performance (explore the instrument's limitations and subtle trade-offs)

Choosing a genome browser for a Model Organism Database: surveying the Maize community

As the B73 maize genome sequencing project neared completion, MaizeGDB began to integrate a graphical genome browser with its existing web interface and database. To ensure that maize researchers would optimally benefit from the potential addition of a genome browser to the existing MaizeGDB resource, personnel at MaizeGDB surveyed researchers’ needs. Collected data indicate that existing genome browsers for maize were inadequate and suggest implementation of a browser with quick interface and intuitive tools would meet most researchers’ needs. Here, we document the survey’s outcomes, review functionalities of available genome browser software platforms and offer our rationale for choosing the GBrowse software suite for MaizeGDB. Because the genome as represented within the MaizeGDB Genome Browser is tied to detailed phenotypic data, molecular marker information, available stocks, etc., the MaizeGDB Genome Browser represents a novel mechanism by which the researchers can leverage maize sequence information toward crop improvement directly

The Maize Genetics and Genomics Database. The Community Resource for Access to Diverse Maize Data

The Maize Genetics and Genomics Database (MaizeGDB) serves the maize (Zea mays) research community by making a wealth of genetics and genomics data available through an intuitive Web-based interface. The goals of the MaizeGDB project are 3-fold: to provide a central repository for public maize information; to present the data through the MaizeGDB Web site in a way that recapitulates biological relationships; and to provide an array of computational tools that address biological questions in an easy-to-use manner at the site. In addition to these primary tasks, MaizeGDB team members also serve the community of maize geneticists by lending technical support for community activities, including the annual Maize Genetics Conference and various workshops, teaching researchers to use both the MaizeGDB Web site and Community Curation Tools, and engaging in collaboration with individual research groups to make their unique data types available through MaizeGDB

MaizeGDB, the community database for maize genetics and genomics

The Maize Genetics and Genomics Database (MaizeGDB) is a central repository for maize sequence, stock, phenotype, genotypic and karyotypic variation, and chromosomal mapping data. In addition, MaizeGDB provides contact information for over 2400 maize cooperative researchers, facilitating interactions between members of the rapidly expanding maize community. MaizeGDB represents the synthesis of all data available previously from ZmDB and from MaizeDB—databases that have been superseded by MaizeGDB. MaizeGDB provides web-based tools for ordering maize stocks from several organizations including the Maize Genetics Cooperation Stock Center and the North Central Regional Plant Introduction Station (NCRPIS). Sequence searches yield records displayed with embedded links to facilitate ordering cloned sequences from various groups including the Maize Gene Discovery Project and the Clemson University Genomics Institute. An intuitive web interface is implemented to facilitate navigation between related data, and analytical tools are embedded within data displays. Web-based curation tools for both designated experts and general researchers are currently under development. MaizeGDB can be accessed at http://www.maizegdb.org/

FIREBall-2: flight preparation of a proven balloon payload to image the intermediate redshift circumgalactic medium

ESA Rocket and Balloon Symposium. Biarritz, May 2022.FIREBall-2 is a stratospheric balloon-borne 1-m telescope coupled to a UV multi-object slit spectrograph designed to map the faint UV emission surrounding z~0.7 galaxies and quasars through their Lyman-alpha line emission. This spectro-imager had its first launch on September 22nd 2018 out of Ft. Sumner, NM, USA. Because the balloon was punctured, the flight was abruptly interrupted. Instead of the nominal 8 hours above 32 km altitude, the instrument could only perform science acquisition for 45 minutes at this altitude. In addition, the shape of the deflated balloon, combined with a full Moon, revealed a severe off-axis scattered light path, directly into the UV science detector and about 100 times larger than expected. In preparation for the next flight, and in addition to describing FIREBall-2's upgrade, this paper discusses the exposure time calculator (ETC) that has been designed to analyze the instrument's optimal performance (explore the instrument's limitations and subtle trade-offs)

FIREBall-2: flight preparation of a proven balloon payload to image the intermediate redshift circumgalactic medium

ESA Rocket and Balloon Symposium. Biarritz, May 2022.FIREBall-2 is a stratospheric balloon-borne 1-m telescope coupled to a UV multi-object slit spectrograph designed to map the faint UV emission surrounding z~0.7 galaxies and quasars through their Lyman-alpha line emission. This spectro-imager had its first launch on September 22nd 2018 out of Ft. Sumner, NM, USA. Because the balloon was punctured, the flight was abruptly interrupted. Instead of the nominal 8 hours above 32 km altitude, the instrument could only perform science acquisition for 45 minutes at this altitude. In addition, the shape of the deflated balloon, combined with a full Moon, revealed a severe off-axis scattered light path, directly into the UV science detector and about 100 times larger than expected. In preparation for the next flight, and in addition to describing FIREBall-2's upgrade, this paper discusses the exposure time calculator (ETC) that has been designed to analyze the instrument's optimal performance (explore the instrument's limitations and subtle trade-offs)