The interaction of recirculation gyres and a deep boundary current

Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 48 (2018): 573-590, doi:10.1175/JPO-D-17-0206.1.Motivated by the proximity of the Northern Recirculation Gyre and the deep western boundary current in the North Atlantic, an idealized model is used to investigate how recirculation gyres and a deep flow along a topographic slope interact. In this two-layer quasigeostrophic model, an unstable jet imposed in the upper layer generates barotropic recirculation gyres. These are maintained by an eddy-mean balance of potential vorticity (PV) in steady state. The authors show that the topographic slope can constrain the northern recirculation gyre meridionally and that the gyre’s adjustment to the slope leads to increased eddy PV fluxes at the base of the slope. When a deep current is present along the topographic slope in the lower layer, these eddy PV fluxes stir the deep current and recirculation gyre waters. Increased proximity to the slope dampens the eddy growth rate within the unstable jet, altering the geometry of recirculation gyre forcing and leading to a decrease in overall eddy PV fluxes. These mechanisms may shape the circulation in the western North Atlantic, with potential feedbacks on the climate system.We gratefully acknowledge an AMS graduate fellowship (IALB) and U.S. National Science Foundation Grants OCE-1332667 and 1332834 (IALB and JMT).2018-09-0

Applying U-Pb chronometry and trace element geochemistry of apatite to carbonatite-phoscorite complexes – as exemplified by the 2.06 Ga Phalaborwa Complex, South Africa

Uranium-lead dating of apatite was undertaken by Laser Ablation-Sector Field-Inductively Coupled Plasma Mass Spectrometry (LA-SF-ICPMS) in situ on apatite from principal rock types of the Loolekop phoscorite-carbonatite intrusion within the Phalaborwa Igneous Complex, South Africa. In situ U-Pb analysis on selected apatite produces U-Pb ages of 2 083.9 ± 41.9 Ma (n = 33; MSWD = 0.87), 2 020.4 ± 116.7 Ma (n = 18; MSWD = 0.91) and 2 034.3 ± 39.0 Ma (n = 17; MSWD = 0.6) for phoscorite, banded carbonatite and transgressive carbonatite, respectively, with a combined age of 2 054.3 ± 21.4 Ma (n = 68; MSWD = 0.86), which we interpret to indicate the timing of emplacement. Apatite U-Pb dates are similar to dates reported in previous studies using zircon and baddeleyite U-Pb systems from the same rock types, showing that apatite can be used as geochronometer in the absence of other commonly used U-Pb-bearing accessory minerals, not only in carbonatite-phoscorite complexes, but in all mafic igneous intrusions. Similar ages for zircon, baddeleyite and apatite indicate little to no re-equilibration of the latter, and suggest that the Loolekop Pipe intrusion cooled below 350°C within ~21 Ma of emplacement. This conclusion is supported by apatite BSE images and trace element systematics, with unimodal igneous trace element characteristics for apatite in each sample. The combination of in situ U-Pb geochronology, trace element geochemistry and BSE imaging makes apatite a useful tool to investigate the emplacement mechanisms of carbonatite-phoscorite complexes, which is particularly advantageous as apatite is one of the main mineral phases in these rock suites.https://gssa.pub/sajg/about.htmlhj2023Geolog

Invasion of Africa by a single pfcrt allele of South East Asian type

BACKGROUND: Because of its dramatic public health impact, Plasmodium falciparum resistance to chloroquine (CQ) has been documented early on. Chloroquine-resistance (CQR) emerged in the late 1950's independently in South East Asia and South America and progressively spread over all malaria areas. CQR was reported in East Africa in the 1970's, and has since invaded the African continent. Many questions remain about the actual selection and spreading process of CQR parasites, and about the evolution of the ancestral mutant gene(s) during spreading. METHODS: Eleven clinical isolates of P. falciparum from Cambodia and 238 from Africa (Senegal, Ivory Coast, Bukina Faso, Mali, Guinea, Togo, Benin, Niger, Congo, Madagascar, Comoros Islands, Tanzania, Kenya, Mozambique, Cameroun, Gabon) were collected during active case detection surveys carried out between 1996 and 2001. Parasite DNA was extracted from frozen blood aliquots and amplification of the gene pfcrt exon 2 (codon 72–76), exon 4 and intron 4 (codon 220 and microsatellite marker) were performed. All fragments were sequenced. RESULTS: 124 isolates with a sensitive (c76/c220:CVMNK/A) haplotype and 125 isolates with a resistant c76/c220:CVIET/S haplotype were found. The microsatellite showed 17 different types in the isolates carrying the c76/c220:CVMNK/A haplotype while all 125 isolates with a CVIET/S haplotype but two had a single microsatellite type, namely (TAAA)3(TA)15, whatever the location or time of collection. CONCLUSION: Those results are consistent with the migration of a single ancestral pfcrt CQR allele from Asia to Africa. This is related to the importance of PFCRT in the fitness of P. falciparum point out this protein as a potential target for developments of new antimalarial drugs

Oligomer formation during gas-phase ozonolysis of small alkenes and enol ethers: new evidence for the central role of the Criegee Intermediate as oligomer chain unit

An important fraction of secondary organic aerosol (SOA) formed by atmospheric oxidation of diverse volatile organic compounds (VOC) has recently been shown to consist of high-molecular weight oligomeric species. In our previous study (Sadezky et al., 2006), we reported the identification and characterization of oligomers as main constituents of SOA from gas-phase ozonolysis of small enol ethers. These oligomers contained repeated chain units of the same chemical composition as the main Criegee Intermediates (CI) formed during the ozonolysis reaction, which were CH<sub>2</sub>O<sub>2</sub> (mass 46) for alkyl vinyl ethers (AVE) and C<sub>2</sub>H<sub>4</sub>O<sub>2</sub> (mass 60) for ethyl propenyl ether (EPE). In the present work, we extend our previous study to another enol ether (ethyl butenyl ether EBE) and a variety of structurally related small alkenes (<i>trans</i>-3-hexene, <i>trans</i>-4-octene and 2,3-dimethyl-2-butene). <br><br> Experiments have been carried out in a 570 l spherical glass reactor at atmospheric conditions in the absence of seed aerosol. SOA formation was measured by a scanning mobility particle sizer (SMPS). SOA filter samples were collected and chemically characterized off-line by ESI(+)/TOF MS and ESI(+)/TOF MS/MS, and elemental compositions were determined by ESI(+)/FTICR MS and ESI(+)/FTICR MS/MS. The results for all investigated unsaturated compounds are in excellent agreement with the observations of our previous study. Analysis of the collected SOA filter samples reveal the presence of oligomeric compounds in the mass range 200 to 800 u as major constituents. The repeated chain units of these oligomers are shown to systematically have the same chemical composition as the respective main Criegee Intermediate (CI) formed during ozonolysis of the unsaturated compounds, which is C<sub>3</sub>H<sub>6</sub>O<sub>2</sub> (mass 74) for ethyl butenyl ether (EBE), <i>trans</i>-3-hexene, and 2,3-dimethyl-2-butene, and C<sub>4</sub>H<sub>8</sub>O<sub>2</sub> (mass 88) for extit{trans}-4-octene. Analogous fragmentation pathways among the oligomers formed by gas-phase ozonolysis of the different alkenes and enol ethers in our present and previous study, characterized by successive losses of the respective CI-like chain unit as a neutral fragment, indicate a similar principal structure. In this work, we confirm the basic structure of a linear oligoperoxide – [CH(R)-O-O]<sub>n</sub> – for all detected oligomers, with the repeated chain unit CH(R)OO corresponding to the respective major CI. The elemental compositions of parent ions, fragment ions and fragmented neutrals determined by accurate mass measurements with the FTICR technique allow us to assign a complete structure to the oligomer molecules. We suggest that the formation of the oligoperoxidic chain units occurs through a new gas-phase reaction mechanism observed for the first time in our present work, which involves the addition of stabilized CI to organic peroxy radicals. Furthermore, copolymerization of CI simultaneously formed in the gas phase from two different unsaturated compounds is shown to occur during the ozonolysis of a mixture of extit{trans}-3-hexene and ethyl vinyl ether (EVE), leading to formation of oligomers with mixed chain units C<sub>3</sub>H<sub>6</sub>O<sub>2</sub> (mass 74) and CH<sub>2</sub>O<sub>2</sub> (mass 46). We therefore suggest oligoperoxide formation by repeated peroxy radical-stabilized CI addition to be a general reaction pathway of small stabilized CI in the gas phase, which represents an alternative way to high-molecular products and thus contributes to SOA formation

Automatically generating streamlined constraint models with ESSENCE and CONJURE

Streamlined constraint reasoning is the addition of uninferred constraints to a constraint model to reduce the search space, while retaining at least one solution. Previously, effective streamlined models have been constructed by hand, requiring an expert to examine closely solutions to small instances of a problem class and identify regularities. We present a system that automatically generates many conjectured regularities for a given Essence specification of a problem class by examining the domains of decision variables present in the problem specification. These conjectures are evaluated independently and in conjunction with one another on a set of instances from the specified class via an automated modelling tool-chain comprising of Conjure, Savile Row and Minion. Once the system has identified effective conjectures they are used to generate streamlined models that allow instances of much larger scale to be solved. Our results demonstrate good models can be identified for problems in combinatorial design, Ramsey theory, graph theory and group theory - often resulting in order of magnitude speed-ups.Postprin

Thermal Properties of Heavy Fermion Compound YbP

Low-temperature specific heat and its field-dependence up to 16 T was measured in a stoichiometric single crystal of YbP. A sharp peak was observed at {\it T}$_{\rm N}$ = 0.53 K in zero magnetic field. Application of external field seems to induce a new magnetic phase above 11 T. The field dependence of the transition temperature in the high-field phase is different from that of the low field phase. The linear coefficient of the electronic specific heat is estimated as 120 mJ/mole K$^{2}$ from low temperature specfic heat, suggesting heavy Fermion state in YbP.Comment: to be published in J.Phys.Soc.Jpn on May, 200