Raft Instability of Biopolymer Gels

Following recent X-ray diffraction experiments by Wong, Li, and Safinya on biopolymer gels, we apply Onsager excluded volume theory to a nematic mixture of rigid rods and strong ``$\pi/2$'' cross-linkers obtaining a long-ranged, highly anisotropic depletion attraction between the linkers. This attraction leads to breakdown of the percolation theory for this class of gels, to breakdown of Onsager's second-order virial method, and to formation of heterogeneities in the form of raft-like ribbons.Comment: 5 pages, 4 figure

Random Polyelectrolytes and Polyampholytes in Solution

The behavior of polyelectrolytes and polyampholytes in semi-dilute solutions is investigated theoretically. Various statistical charge distributions along the polyelectrolyte chains are considered: smeared, annealed, permuted and quenched. Annealed polyampholytes are also considered. Path integral formulation was used to derive mean field free energies for the different models. Self-consistent field equation is obtained for the polymer order parameter and a Poisson-Boltzmann like equation for the electrostatic potential. The random phase approximation is used to calculate the monomer-monomer structure factor S(q) for the different statistical charge distribution models. We show that in the annealed model, fluctuations of the the monomer charges contribute to the electrostatic screening in addition to the free ions in the solution. The strength of this screening depends on the variance of the monomer charge distribution and is especially important for polyampholytes in bad solvent conditions where the mesophase separation is enhanced. The ratio between the variance and the net average charge determines whether polyampholytes behave as polyelectrolytes or as neutral chains.Comment: 18 pages, 5 figures, submitted to Eur. Phys. J.

Inter-filament Attractions Narrow the Length Distribution of Actin Filaments

We show that the exponential length distribution that is typical of actin filaments under physiological conditions dramatically narrows in the presence of (i) crosslinker proteins (ii) polyvalent counterions or (iii) depletion mediated attractions. A simple theoretical model shows that in equilibrium, short-range attractions enhance the tendency of filaments to align parallel to each other, eventually leading to an increase in the average filament length and a decrease in the relative width of the distribution of filament lengths.Comment: 5 pages, 4 figure

Structural Polymorphism of the Cytoskeleton: A Model of Linker-Assisted Filament Aggregation

The phase behavior of charged rods in the presence of inter-rod linkers is studied theoretically as a model for the equilibrium behavior underlying the organization of actin filaments by linker proteins in the cytoskeleton. The presence of linkers in the solution modifies the effective inter-rod interaction and can lead to inter-filament attraction. Depending on the system's composition and physical properties such as linker binding energies, filaments will either orient perpendicular or parallel to each other, leading to network-like or bundled structures. We show that such a system can have one of three generic phase diagrams, one dominated by bundles, another by networks, and the third containing both bundle and network-like phases. The first two diagrams can be found over a wide range of interaction energies, while the third occurs only for a narrow range. These results provide theoretical understanding of the classification of linker proteins as bundling proteins or crosslinking proteins. In addition, they suggest possible mechanisms by which the cell may control cytoskeletal morphology.Comment: 17 pages, 3 figure

Polyelectrolyte multilayer formation: electrostatics and short-range interactions

We investigate the phenomenon of multilayer formation via layer-by-layer deposition of alternating charge polyelectrolytes. Using mean-field theory, we find that a strong short-range attraction between the two types of polymer chains is essential for the formation of multilayers. The dependence of the required short-range attraction on the polymer charge fraction and salt concentration is calculated. For weak short-range attraction between any two adjacent layers, the adsorbed amount (per added layer) decays as the distance from the surface increases, until the chains stop adsorbing altogether. For strong short-range attraction, the adsorbed amount per layer increases after an initial decrease, and finally it stabilizes in the form of a polyelectrolyte multilayer that can be repeated many times.Comment: 8 pages, 7 figure