Diene-modified nucleotides for the DielsAlder-mediated functional tagging of DNA

We explore the potential of the DielsAlder cycloaddition for the functional tagging of DNA strands. A deoxyuridine triphosphate derivative carrying a diene at position 5 of the pyrimidine base was synthesized using a two-step procedure. The derivative was efficiently accepted as substrate in enzymatic polymerization assays. Diene carrying strands underwent successful cycloaddition with maleimide-terminated fluorescence dyes and a polymeric reagent. Furthermore, a nucleotide carrying a peptide via a DielsAlder cyclohexene linkage was prepared and sequence-specifically incorporated into DNA. The DielsAlder reaction presents a number of positive attributes such as good chemoselectivity, water compatibility, high-yield under mild conditions and no additional reagents apart from a diene and a dienophile. Furthermore, suitable dienophiles are commercially available in the form of maleimide-derivatives of fluorescent dyes and bioaffinity tags. Based on these advantages, diene- and cyclohexene-based nucleotide triphosphates are expected to find wider use in the area of nucleic acid chemistry

Theory of Electric Field-Induced Photoluminescence Quenching in Disordered Molecular Solids

The dynamics of excitons in disordered molecular solids is studied theoretically, taking into account migration between different sites, recombination, and dissociation into free charge carriers in the presence of an electric field. The theory is applied to interpret the results of electric field-induced photoluminescence (PL) quenching experiments on molecularly doped polymers by Deussen et al. [Chem. Phys. 207, 147 (1996)]. Using an intermolecular dissociation mechanism, the dependence of the PL quenching on the electric field strength and the dopant concentration, and the time evolution of the transient PL quenching can be well described. The results constitute additional proof of the distinct exciton dissociation mechanisms in conjugated polymer blends and molecularly doped polymers.Comment: 4 pages RevTeX, 3 Postscript figure

Chemical stratification in the atmosphere of Ap star HD 133792. Regularized solution of the vertical inversion problem

High spectral resolution studies of cool Ap stars reveal conspicuous anomalies of the shape and strength of many absorption lines. This is a signature of large atmospheric chemical gradients produced by the selective radiative levitation and gravitational settling of chemical species. Here we present a new approach to mapping the vertical chemical structures in stellar atmospheres. We have developed a regularized chemical inversion procedure that uses all information available in high-resolution stellar spectra. The new technique for the first time allowed us to recover chemical profiles without making a priori assumptions about the shape of chemical distributions. We have derived average abundances and applied the vertical inversion procedure to the high-resolution VLT UVES spectra of the weakly magnetic, cool Ap star HD 133792. Our analysis yielded improved estimates of the atmospheric parameters of HD 133792. We show that this star has negligible vsini and the mean magnetic field modulus =1.1+/-0.1 kG. We have derived average abundances for 43 ions and obtained vertical distributions of Ca, Si, Mg, Fe, Cr, and Sr. All these elements except Mg show high overabundance in the deep layers and solar or sub-solar composition in the upper atmosphere of HD 133792. In contrast, the Mg abundance increases with height. We find that transition from the metal-enhanced to metal-depleted zones typically occurs in a rather narrow range of depths in the atmosphere of HD 133792. Based on the derived photospheric abundances, we conclude that HD 133792 belongs to the rare group of evolved cool Ap stars, which possesses very large Fe-peak enhancement, but lacks a prominent overabundance of the rare-earth elements.Comment: Accepted by A&A; 12 pages, 9 figure

Orbit optimization for ASTROD-GW and its time delay interferometry with two arms using CGC ephemeris

ASTROD-GW (ASTROD [Astrodynamical Space Test of Relativity using Optical Devices] optimized for Gravitation Wave detection) is an optimization of ASTROD to focus on the goal of detection of gravitation waves. The detection sensitivity is shifted 52 times toward larger wavelength compared to that of LISA. The mission orbits of the 3 spacecraft forming a nearly equilateral triangular array are chosen to be near the Sun-Earth Lagrange points L3, L4 and L5. The 3 spacecraft range interferometrically with one another with arm length about 260 million kilometers. In order to attain the requisite sensitivity for ASTROD-GW, laser frequency noise must be suppressed below the secondary noises such as the optical path noise, acceleration noise etc. For suppressing laser frequency noise, we need to use time delay interferometry (TDI) to match the two different optical paths (times of travel). Since planets and other solar-system bodies perturb the orbits of ASTROD-GW spacecraft and affect the (TDI), we simulate the time delay numerically using CGC 2.7 ephemeris framework. To conform to the ASTROD-GW planning, we work out a set of 20-year optimized mission orbits of ASTROD-GW spacecraft starting at June 21, 2028, and calculate the residual optical path differences in the first and second generation TDI for one-detector case. In our optimized mission orbits for 20 years, changes of arm length are less than 0.0003 AU; the relative Doppler velocities are less than 3m/s. All the second generation TDI for one-detector case satisfies the ASTROD-GW requirement.Comment: 17 pages, 7 figures, 1 tabl